Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00094 ATGCCTGCTGAGAACTCGAACTCGAACAGTTGGGAAGGGGAAGTGGAAGCGTTTGTTGAAGTTGATCCAACGGGGAGGTTTGGGCGTTACAGTGATCTGCTTGGGTTTGGAGCTGTGAAGAAGGTTTATAGGGCGTTTGATCAAGAGGAAGGTATTGAGGTGGCATGGAATCAGGTTCGTCTCAGGAATTTCAGTGAAGACCCTGTTCTCATAAACCGCCTTCATTCTGAGGTTGAGTTGCTCAGAACACTCTGCAACAAGTATATCATTGTGTGTTACAGTGTTTGGAAAGATAATGACCGTGGCAATATCAATTTTATTACTGAGGTCTGCACTTCTGGGAATCTTAGGGATTACAGGAAGAAGCACCGCCATGTCTCCATTAAGGCATTCAAGAAATGGTCTAAACAAGTCCTTGAGGGGTTAGAGTATCTTCATACACATGACCCCTGCATTATTCACAGAGATCTCAATTGCAGTAACATCTTTGTTAATGGGAACATTGGCCAGGTTGTGAAAATTGGTGATCTTGGATTGGCTGCAATAGTGGGAAGGAGCCATGCAGCACATTCAATTTTAGGGACACCGGAGTATATGGCACCAGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATATATTCTTTTGGAATGTGCTTGCTTGAAATGGTTACAATGGAGATACCCTACAGTGAATGTGACAGTGTCGCCAAGATATACAAAAAGGTCACAATGGGAATTAAGCCTCAGTCCTTGAGCAAAGTCACAGATCCAGAGGTGAAGGCGTTCATTGAGAAATGCATAGCACAACCAAGAGCAAGACCTTCAGCCACGGATCTTCTTAAGGATCCTTTCTTTTATGAACTCAACAATGATGAAGAATCAACGCTACTCACTTGA 903 0.4363 MPAENSNSNSWEGEVEAFVEVDPTGRFGRYSDLLGFGAVKKVYRAFDQEEGIEVAWNQVRLRNFSEDPVLINRLHSEVELLRTLCNKYIIVCYSVWKDNDRGNINFITEVCTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVVKIGDLGLAAIVGRSHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTMGIKPQSLSKVTDPEVKAFIEKCIAQPRARPSATDLLKDPFFYELNNDEESTLLT. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00094 300 SUPERFAMILY Protein kinase-like (PK-like) 21 287 IPR011009 -
Seca8g00094 300 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 290 - -
Seca8g00094 300 Coils Coil 298 300 - -
Seca8g00094 300 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Seca8g00094 300 FunFam probable serine/threonine-protein kinase WNK9 111 293 - -
Seca8g00094 300 ProSiteProfiles Protein kinase domain profile. 28 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00094 300 Pfam Protein kinase domain 32 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00094 300 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Seca8g00094 300 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00094 Seca-Chr8 1255712 1258485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00094 3 287 MAP Kinase Kinase Kinase AT5G55560 74.737 4.62e-166 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca8g00094 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00094 K08867 - gmx:100798280 563.918