Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00091 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAACTGAAGAGCGACTCAGAGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACGGGAAGAGCTCGTGGATTTGGTTTTGTTGTTTTTTCAGACCCAGCTGTTGCAGAAATAGTCATCAAAGAAAAGCACAGCATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCGAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTCTTGCTCAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCACCAGGACCTAGCCGTACCCCACTTGGTGGATTCAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAATGCTGTTGGAGGCTATGGACTTCGGGTGGATGGTAGATTCAGTCCAGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTTTGAACCTGGTTTGAGTGCTGGATTTGGGGGGAATGCAAATTTCAATAACAATCTTAGCTATGGTCGGGCATTAAATCCTTACTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAATGGCAATGGAGGAAACAATTCTTTCTTCAGTAATGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAGTGCATACATTGGATCATCAGGAAGCGGGAGTGTTGGTGGAAACACATTTGGCAATACCGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGACATGGGGGAGGGAACAATGTGTCACAGAATAGTGGCAACCTTGGATATGGAGGTGGCGACAACACTTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCAGTGGTACCACACTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCTGATTTTTACAATAATAATTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCAGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTGCTACATAG 1443 0.4394 MQSDNGKLFIGGISWDTTEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHSIDGRMVEAKKAVPRDDQNILSRNSGSSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGFNYGLSRVNSFLNGFTQGYTPNAVGGYGLRVDGRFSPVASGRSGFAPFGSGYGMSMNFEPGLSAGFGGNANFNNNLSYGRALNPYFIGNSNRFGSPVGYDNGNGGNNSFFSNVTRNLWGNGGLSYGTSSANSSAYIGSSGSGSVGGNTFGNTGVNWGSSAISGHGGGNNVSQNSGNLGYGGGDNTYGLGTGGYGRSSGTTLAPTSSYSASNGGVDGAFADFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00091 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca8g00091 480 Gene3D - 104 190 IPR012677 -
Seca8g00091 480 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Seca8g00091 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Seca8g00091 480 CDD RRM2_Hrp1p 108 185 - -
Seca8g00091 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Seca8g00091 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Seca8g00091 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 68 IPR000504 GO:0003723
Seca8g00091 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 166 IPR000504 GO:0003723
Seca8g00091 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Seca8g00091 480 Gene3D - 4 88 IPR012677 -
Seca8g00091 480 MobiDBLite consensus disorder prediction 458 480 - -
Seca8g00091 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca8g00091 480 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Seca8g00091 480 SMART rrm1_1 108 180 IPR000504 GO:0003723
Seca8g00091 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00091 Seca-Chr8 1237601 1241913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00091 8 186 Eukaryotic Initiation Factors Gene Family AT2G36660 30.319 8.71e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00091 K14411 - gmx:100795907 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00091 8 1237601 1241913 Seca8g00091 8 1237601 1241913 ECH