Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00072 ATGGAGGGTGAGAATCAGGTAAATGATGCAAAAAACAAGCAAGTATCTGATGAAGAAGCTTTCCTATTTGCCATGGAACTAGCAGGTGCCTCTGCTGTCCCTATGGTTCTCAAGTCAGCTTTGGAGCTTGGAGTCATTGAAACTATAGCAAAGGCTGGTCCTGGAGCATACCTTTCCCCTTCTCACATAGCTTCTCAGATTCCATCAATAAAGAATCCAGAAGCACCTGCTATGTTGGATCGCTTGTTGCGCTTATTGGCTAGCTACAACATCCTCACATATTCCCTCATCACTCATAGTCATGGAGATGCTGAAAGACACTATGGTCTTAGCCCTTATGCCAAATACTTTGTCAACAACCAAGATGGTTTCTCCATGATTTCTTCCTTTCTCATGCAACATGACAAAGTCCTCAAAGACATGTGGTATCATTTGACAGATTCAGTTGAGGAGGGTGGGCTTCCATTTAACAATGCTTATGGAATGACTGCCTTTGAATTTCATGGGACAAATCCAAGGTTCAACAAGCTTTTCAACAAGGGGATGTCAGATTGCTCAAGCATCATAATGAATAAAGTTCTTGAGACCTATAAAGGCTTTGAGGGTCTTGGATCTGTGGTTGATGTTGGTGGTGGGACTGGAACTATCATTAACATGATTGTCTCTAAGTATCCCTCCATAAAGGGGATTAATTTTGACTTGCCTCACGTCATTAAAGAAGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGTGGAGACATGTTTGTCAGTATTCCAAAAGGTGATGTCATTTTCATGAAGTGGATATGTCATGACTGGAATGATGAGGAATGCTTGAAATTTTTGAAGAATTGCTATGACTCGGTGCCTGAGACAGGGAAGGTGATTTTGGTTGAAAGCAATATTCCAGCAGTTCCAGACTCTAAGTTGGCGTCAAGGTGTGTGTTTGAAATGGATGTTATAATGTTGTGTCATAGCTCAGGTGGAAGAGAGAGAACAGAGAAAGAGCATGAGGCATTGGCTAAGGGGGCTGGATTCCAAGGTTTCCGAGTAGCATGTTGTGCTTTCAACATGTATGTCATGGAGTTTCTTAAGAAGCCTTAG 1104 0.423 MEGENQVNDAKNKQVSDEEAFLFAMELAGASAVPMVLKSALELGVIETIAKAGPGAYLSPSHIASQIPSIKNPEAPAMLDRLLRLLASYNILTYSLITHSHGDAERHYGLSPYAKYFVNNQDGFSMISSFLMQHDKVLKDMWYHLTDSVEEGGLPFNNAYGMTAFEFHGTNPRFNKLFNKGMSDCSSIIMNKVLETYKGFEGLGSVVDVGGGTGTIINMIVSKYPSIKGINFDLPHVIKEAPSYPGVEHVGGDMFVSIPKGDVIFMKWICHDWNDEECLKFLKNCYDSVPETGKVILVESNIPAVPDSKLASRCVFEMDVIMLCHSSGGRERTEKEHEALAKGAGFQGFRVACCAFNMYVMEFLKKP. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00072 367 CDD AdoMet_MTases 206 298 - -
Seca8g00072 367 PANTHER O-METHYLTRANSFERASE 24 346 IPR016461 GO:0008168
Seca8g00072 367 SUPERFAMILY "Winged helix" DNA-binding domain 16 120 IPR036390 -
Seca8g00072 367 Gene3D Vaccinia Virus protein VP39 118 365 IPR029063 -
Seca8g00072 367 FunFam Caffeic acid 3-O-methyltransferase 2 117 - -
Seca8g00072 367 Pfam Dimerisation domain 35 87 IPR012967 GO:0046983
Seca8g00072 367 FunFam Caffeic acid O-methyltransferase 118 365 - -
Seca8g00072 367 Gene3D - 3 117 IPR036388 -
Seca8g00072 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 365 IPR016461 GO:0008168
Seca8g00072 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 363 IPR029063 -
Seca8g00072 367 Pfam O-methyltransferase domain 142 347 IPR001077 GO:0008171
Seca8g00072 367 PIRSF O-mtase 1 365 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00072 Seca-Chr8 903005 905256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00072 14 366 Monolignol Biosynthesis Gene Families AT5G54160 63.173 9.21e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00072 K13066 - gmx:100780100 522.702