Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00055 ATGTCGAGCAATCCGCGAATCAATTCGCAGTTAGCCATTGCCATTCGATTCGCCAGAATGGCGAGATCTGGGAATTCTAGTGTTACCACAAACAAGGTTTACCACTTTACTCACAATCAGAATCGTCCAGACAAGGCTTTCACTACTGAGAGAGCTAAGAAGCCTGGGAAGGCCAATGCTTGCAGTGGAAAGATATTTGTTACTGTTCCTCCTGATCATTTTGGACCTATCCCTGCTGAGAATGACCCTACAAGGGACCGTGGTGTTCTTGTTGGGGACACTTGGGAGGATCGGATGGAATGTAGACAGTGGGGTGCTCATCTTCCTCATGTTGCTGGCATTGCTGGCCAGAGTACTTATGGTGCTCAGTCTGTGGCCCTTTCTGGTGGTTACATTGATGATGAGGATCATGGTGAGTGGTTCCTTTATACTGGTAGTGGTGGGAGAGATCTCAGTGGTAACAAAAGGACCAACAAACAGCAATCCTTTGATCAGAAATTTGAGAATATGAATGAGGCACTGAGATTAAGTTGCCGAAAAGGTTATCCAGTTAGGGTTGTCAGGTCCCACAAGGAGAAACGATCTTCTTATGCACCGGATGCTGGGGTGCGATATGATGGAGTTTATAGAATTGAGAAATGCTGGCGGAAAAATGGAGTACATGGTTGCAAGGTTTGCAGATATTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACTACTGCTGAACGTGGAGATCGACCCCGCCCACTGCCTAAAATTAAAGAGTTGAAGGATGCAATTGACATAACTGAAAGGAAGGAATCTCCATCATGGGATTATGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACAAAGCAGAAAAACGGTTAATGTGGTAAATCCTGAGGATGGGACTCATGTAAGGGTCAAACGGAAAGTTAAAGATGTGTCTGTCAAAGAAAGGCTTTTGAGAGAGTTTGGCTGCCAAATCTGTCACAAGGTGATGTCTTTTCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTCTGGAAGGAGCCTTTTCTGGCCAAAGTTTCATCAGAAAGAGGGCATGTGAAAGTGGACGTACTTTAAGGGCACAGAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGAGTTTCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTATTATAGAATCACTCCAGCACCAGGTTGAACAGATGGAGGAAAATTCTGAAGAGTTGAGTGATAAAAATGATGAAAATATCAAGAATCTGCATGATGAGGAGGCTGAAGTTTCAAAACCCTGTGATTCAAGTGAAAAAGTTTTGGAGGAAATCAATGACAACGATCTGAATCGGCCACTCAAGCGGAGGAAAAGTTCTGGTGGCACGGTTGTGGTGAACATAGAGGAACATACTGATGAGGCTGAACTAGGAGACGCAGTAAAGGTTTGTAATTAA 1485 0.4438 MSSNPRINSQLAIAIRFARMARSGNSSVTTNKVYHFTHNQNRPDKAFTTERAKKPGKANACSGKIFVTVPPDHFGPIPAENDPTRDRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSTYGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKQQSFDQKFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPDAGVRYDGVYRIEKCWRKNGVHGCKVCRYLFVRCDNEPAPWTTAERGDRPRPLPKIKELKDAIDITERKESPSWDYDEEKGCWLWKKPPPQSRKTVNVVNPEDGTHVRVKRKVKDVSVKERLLREFGCQICHKVMSFPLTTPCAHNFCKACLEGAFSGQSFIRKRACESGRTLRAQKNIMKCPSCSIDIAEFLQNPQVNREMMGIIESLQHQVEQMEENSEELSDKNDENIKNLHDEEAEVSKPCDSSEKVLEEINDNDLNRPLKRRKSSGGTVVVNIEEHTDEAELGDAVKVCN. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00055 494 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 421 IPR045134 -
Seca8g00055 494 Gene3D - 55 251 IPR036987 -
Seca8g00055 494 SMART ring_2 327 384 IPR001841 -
Seca8g00055 494 Pfam RING-type zinc-finger 327 382 IPR027370 -
Seca8g00055 494 SUPERFAMILY RING/U-box 320 409 - -
Seca8g00055 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 438 IPR013083 -
Seca8g00055 494 ProSiteProfiles YDG domain profile. 84 232 IPR003105 -
Seca8g00055 494 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Seca8g00055 494 Pfam SAD/SRA domain 87 235 IPR003105 -
Seca8g00055 494 Coils Coil 398 439 - -
Seca8g00055 494 SMART G9a_1 70 236 IPR003105 -
Seca8g00055 494 ProSiteProfiles Zinc finger RING-type profile. 327 385 IPR001841 -
Seca8g00055 494 SUPERFAMILY PUA domain-like 58 252 IPR015947 -
Seca8g00055 494 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 55 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00055 Seca-Chr8 741652 745458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00055 1 416 C2H2 Transcription Factor Family AT5G39550 66.667 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00055 K10638 - gmx:100786796 792.727