Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00053 ATGAACATGGCGACCATTATTCCACAGAATGCCAACCTCTGTGTGAGTGACTCAGACCCTCTAAACTGGGATTCGGCAGCTAATTCACTCAAGGGTAGCCACTTTGATGAAGTAAAACGCATGGTGGCAGAGTACCGGAAGCCAGTGATCTGTTTGGGTGGGGAGGAGACACTAACTATATCTCAGGTGGCTTCTGTTGCTAACCATAACTCACAAGTTAAGGTTGACCTCTCAGAGTCTGCAAGAGCAGGAGTTGAGGCCAGCTGCGAATGGATCATGGAAAACATTAACAAAGGCACTCCCATTTATGGTGTTACCACTGGCTTTGGTGCTGCCTCTAACAGACAAACCAAACAAGGCATTGCTCTTCAGAAGGAGATGGTTAGGTTTTTAAACTGCGCAATATTTGGATATGAAACAGAGTTATCTCATACACTGCCTCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTGCAAGGGTATTCAGGCATTAGATTTGAAATCTTAGAAGCTATCACCAAACTTCTCAACCACAATGTCACCCCCATCTTGCCATTACGTGGTACAATTACTGCTTCTGGTGATCTAATTCCTCTGTCCTACATTGTTGCATTGCTAACAGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGACCCTTAATGCCAAGGAAGCTTTCCATTTAGCAGGTCTGAATTCTGGGTTCTTTGAGTTGAAGCCCAAGGAAGGCGTTGCCCTTGTAAATGGCACAGCTGTTGGATCTGGTGTAGCTGCAAAGGTACTTTTTGAGGCAAACATATTAGCTTTATTCTCAGTAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACACATCATCTTATACACAAGCTGAAGTACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGCTCTTATGTCAAAAATGCTAAACTGCAACAGACAGATCCATTGCAGAAGCCTAGAAAAGATCGTTATGCTCTTCAAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAGTCATCCGGTATTCAACCAGATCAATTGAAAGGGAGATAAATTCAGTCAATGACAATCCTTTGATTGATGTCACAAGGAATAAGGTTCTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTAGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACCGAGCTAGTCAATGACATTTATAATAATGGGTTACCATCAAATCTCTCTGCTGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCGGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATTTAGCAAACCCTGTAACAAGCCATGTGCAAAGTGCAGAGCAGCACAACCAAGATGTGAATTCTTTGGGCTTAATTTCTGCCTGGAAAACTGTCGAAGCTGTTGAGATATTGAAGCTCATGTCTTCCACATATTTGGTTGCACTCTGTCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTTAAGAACACGGTCAGGAACACTGTAAGCAGTGTTGCAAAGCAGACATTAACTAGAGAAGACAAAGAAGAATTTAGCCCATTTCCATTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATAGAGAATATGTATTCTCTTACATTGATGATCCCTCCAACGTTACGTATCCATTGATGCCAAAACTAAAGCAAGTACTTTATGAGAAAGCACACATCAGTGCCATTAATGACAAGAATGTGAGCTTGTCAATTTTTGAGAAGATTGGAGCTTTTGAGGATGAACTGAAGTCTCTCTTGCCAAAGGAAATTGAAAGTGCCAGGGTGGCTTATGAGAATGGCAATCCAGCCATTCCGAACAGAATTAAGGAATGTAGGTCATACCCACTATACAAGTTTGTGAGGGAAGAATTAGGGATAGGGTTGCTGACCGGAGATAAGACTGACTCACCAGATGAGGAATTTGAAAAAGTATTTACAGCCATGAGTCAAGCAAAGATTATAGACCCAATTCTGGAATGTCTTGGAGATTGGAACGGAGTTCCCATCCCAATATAA 2130 0.4216 MNMATIIPQNANLCVSDSDPLNWDSAANSLKGSHFDEVKRMVAEYRKPVICLGGEETLTISQVASVANHNSQVKVDLSESARAGVEASCEWIMENINKGTPIYGVTTGFGAASNRQTKQGIALQKEMVRFLNCAIFGYETELSHTLPQSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIVALLTGRRNSKAVGPSGETLNAKEAFHLAGLNSGFFELKPKEGVALVNGTAVGSGVAAKVLFEANILALFSVVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQTDPLQKPRKDRYALQTSPQWLGPQIEVIRYSTRSIEREINSVNDNPLIDVTRNKVLNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDIYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFKNTVRNTVSSVAKQTLTREDKEEFSPFPFCEKDLLKVVDREYVFSYIDDPSNVTYPLMPKLKQVLYEKAHISAINDKNVSLSIFEKIGAFEDELKSLLPKEIESARVAYENGNPAIPNRIKECRSYPLYKFVREELGIGLLTGDKTDSPDEEFEKVFTAMSQAKIIDPILECLGDWNGVPIPI. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00053 709 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Seca8g00053 709 Gene3D Fumarase/aspartase (Central domain) 258 704 - -
Seca8g00053 709 NCBIfam phenylalanine ammonia-lyase 19 699 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca8g00053 709 PANTHER HISTIDINE AMMONIA-LYASE 17 709 IPR001106 -
Seca8g00053 709 FunFam Phenylalanine ammonia-lyase 10 257 - -
Seca8g00053 709 SUPERFAMILY L-aspartase-like 19 709 IPR008948 GO:0003824
Seca8g00053 709 Gene3D - 10 257 IPR024083 -
Seca8g00053 709 Pfam Aromatic amino acid lyase 58 523 IPR001106 -
Seca8g00053 709 CDD PAL-HAL 56 520 IPR001106 -
Seca8g00053 709 Gene3D - 523 644 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00053 Seca-Chr8 719628 721910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00053 12 709 Monolignol Biosynthesis Gene Families AT2G37040 72.961 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00053 K10775 - gmx:100787872 1247.26