Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00047 ATGCAACAGCTTCTCAGCATGGGCTTCCCAGACGAGTTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGGAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAACCCTTCCCCTTCCTCCTCCTCCTTCCAGCCCAAGCTCGACCGTTTCTTCCATTCCCATTCCCAATCCCAATCCCAATCCATCGACGCACACGAAGAAGACGAACCAACCAAACGCCTCAAGCTATCACCACCACCACCAACCACTTCTCACTCCCAACAACAACCACCTAGGTCTTCCTTCTTCTTCAACCGCTCCAGGGCACCAGACAAAAAACACACTCACATTCAAGAACCCTTATACGAGCGTTTGCGTCCTAGAACATTGGATGACGTGGTGGGTCAGGACCATCTCCTCGCAACCAATTCCCTTCTTCGCTCTGCAATCCAACGCAACCGTCTCCCTTCCATCCTCTTGTGGGGTCCACCTGGCACTGGTAAGACCACTATCGCCAAAGCTATTGTCAATTCAGCAACCTCTTCTTGCTATCGCTTTGTGTCCTTATCTGCTGTCACTAGTGGCGTTAAAGATGTGAGGGATGCCGTTGATGAGGCCAGAAAACTCAGACTCAAAAACAACCAAACCACTGTTTTGTTTGTCGATGAGGTTCACAGGTTCAATAAGTCTCAACAAGACTCTTTCTTACCCGTCATTGAAGATGGCAGTATTGTCTTCGTTGGGGCCACTACTGAAAACCCTTCTTTCCATTTGATTACGCCACTCTTGTCTCGTTGCCGTGTCCTTACCCTCAACCCTCTTAAACCTAACCATCTTGCTCTGCTTCTCAGCCGAGCTGTTACTGATTTGGACAGAGGGTTGGTGCAAAGCCTCGGTTTTCAAGCTGAAATCAATGTGGGTGAGGATGTGGTTGATTTTATAGCCAACAATTGTGATGGGGATGCTAGGGTGGCTTTGAATGCTTTGGAGATTGCTGCTGTTACTGCGGCTGCACGGTTACAACACGTTAAGAAGCAAAATGAAGAAGACACAAATGAGGAATGCAAGGCTGTTGGTGTTGGTGTTACTCTTGATGATGCAAAGGAGGCATTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATTTAATCAGTGCTTTGCATAAGTCTATGAGGGGAAGTGATGCTAATGCTGCGATTTATTGGTTGGCTAGAATGTTACAAGGAGGTGAAGAGCCTCTTTATATTGCACGTAGGCTCATACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCATTAGCTCTTAATCAGGCTGTGTCCTGCTACCAAGCTTGCCACTTTTTGGGAATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGCTGCTTACTTGGCTTTTGCTCCTAAATCTATTGCAGTTTATCGAGCAATTGGAGCTGCTGAAAAGGTTGTAAGGGAATCAGTTGGACAGAATGAAGGGGTGCCTCTGCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGGTACATATACCCTCCTGATAATCCCTCCTCAACACAGACCTACTTACCACCCTCACTTGAAGGCCACAAGTTCCTCGATTGGCCTGACAAGAGTCCCTTTGATGGATAA 1659 0.4768 MQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNPSPSSSSFQPKLDRFFHSHSQSQSQSIDAHEEDEPTKRLKLSPPPPTTSHSQQQPPRSSFFFNRSRAPDKKHTHIQEPLYERLRPRTLDDVVGQDHLLATNSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSATSSCYRFVSLSAVTSGVKDVRDAVDEARKLRLKNNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPNHLALLLSRAVTDLDRGLVQSLGFQAEINVGEDVVDFIANNCDGDARVALNALEIAAVTAAARLQHVKKQNEEDTNEECKAVGVGVTLDDAKEAFQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLQGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCAAYLAFAPKSIAVYRAIGAAEKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQTYLPPSLEGHKFLDWPDKSPFDG. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00047 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 36 IPR015940 -
Seca8g00047 552 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 2 547 - -
Seca8g00047 552 FunFam Replication-associated recombination protein A 109 270 - -
Seca8g00047 552 Pfam ATPase family associated with various cellular activities (AAA) 155 265 IPR003959 GO:0005524|GO:0016887
Seca8g00047 552 Pfam MgsA AAA+ ATPase C terminal 395 543 IPR021886 -
Seca8g00047 552 Gene3D - 271 347 - -
Seca8g00047 552 CDD HLD_clamp_RarA 271 369 - -
Seca8g00047 552 CDD AAA 131 264 - -
Seca8g00047 552 SUPERFAMILY post-AAA+ oligomerization domain-like 379 544 IPR008921 GO:0003677|GO:0006260
Seca8g00047 552 Gene3D - 473 548 - -
Seca8g00047 552 MobiDBLite consensus disorder prediction 33 114 - -
Seca8g00047 552 MobiDBLite consensus disorder prediction 33 64 - -
Seca8g00047 552 SMART AAA_5 151 271 IPR003593 GO:0016887
Seca8g00047 552 PRINTS CbxX/CfqX superfamily signature 318 330 IPR000641 GO:0005524
Seca8g00047 552 PRINTS CbxX/CfqX superfamily signature 203 222 IPR000641 GO:0005524
Seca8g00047 552 PRINTS CbxX/CfqX superfamily signature 154 169 IPR000641 GO:0005524
Seca8g00047 552 Gene3D - 369 472 - -
Seca8g00047 552 Gene3D - 1 48 - -
Seca8g00047 552 SUPERFAMILY UBA-like 1 45 IPR009060 GO:0005515
Seca8g00047 552 Pfam AAA C-terminal domain 300 394 IPR032423 -
Seca8g00047 552 MobiDBLite consensus disorder prediction 82 100 - -
Seca8g00047 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 345 IPR027417 -
Seca8g00047 552 Gene3D - 106 269 IPR027417 -
Seca8g00047 552 FunFam AAA-type ATPase family protein 271 345 - -
Seca8g00047 552 FunFam Putative AAA family ATPase 369 472 - -
Seca8g00047 552 Pfam UBA/TS-N domain 2 33 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00047 Seca-Chr8 680290 681948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00047 117 395 Core DNA Replication Machinery Family AT1G77470 26.316 6.77e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00047 K07478 - gmx:100799257 823.928