Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00038 ATGATAAACCTAATTGTGAAGAGGAAAGCGACAGTGGGCAAACAAAACCGAAGAAGAAGGTGCGAACTCAGTGGAAAAGAAAAAAGGGAAGGGGTCTCCAATCGCTCAAGTGAAGTTGCGCTGAGTTTGGGCACAGCGTTTCGTTGGTTTGATAATTTGATGGAAAAGAGAGGCGCAGTCTCAGATGCTGAGCTTCAAACTGTGTTGGATCCTACTCAGACAAAGATATGTGGTGATGGAAATGAAAAAGGTTCCTTGATTCCTCAATCCAGAAGACCTACCCTCTCCTCGTTGCAAATACCAGCATGGTCATTGGATATTGCATTATCTTCTTTTGCAAAGACGGATGGTCCTTCACCTTCAATTTCACTGTCAAGTCCTGGTTCAACTGCTAGAGGACTTCCCCCAAGGCCAAATTCAGCTAAAGCCAGGCCTTCCATGAAAAGTTTACTTCCTCAGAGGAGCTTAAGGACAAAAGCTTCTCCCCAGGATGTTGAAAGGACAGTTCTTATAGTTCCTGATACTCCCTCGTCAGATGCTCCTTTGGAGAAACCTTCCACTTCAAGGTCCCTGTCTCTTAATAGTAGGGTCATAACACCCCCATCAACAAAAGCTGTACACTCATTACCAGTTACTCCATTTGCAACTTCAGGTGCAGAGAATGTGCATGGAAAACGTCTGGGGTGTGATTCTGGTTTTAGTACAATTGAAATTCAGCAGCATATAACTCGATCATTATCGGTTCCAGTTAATGGCAAAGGCACTAAGTTAAGGCGTACAGATTCTAGGTGCTTGTTTCGTGTGATTTCAGCACAACCACATCTTGAAACTGTTGTTGCAACCTCAACTGATGATGCTTCGGTTCCAAAGACCGCTGTTGAAGATGCTAGTGAGGATATTCCAGAGGAAGAAGCAGTGTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGAAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGAGTGTGCTGTAAAGTGGTTTAGTATTAAAGGAAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCAAACTGCTTCTAGGCAGCCATCAAATGTGCCACAACAGAGAGAAGTAGCATATTACAGGCATGATCTGGCAGGATGTACCGGTACTTATCTTGGTCAGCATGCTTGCTTACTTTTGCTTCCTAGAGCAACTACTGGTATGCTTTTCTTTGTACATGTGCAGAAGTTTATGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCACTACCCTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTTCGTCAACCATGGTGAGCAGGACTTACGTCTGGGCTTATGCTTGCTTCCAGTTTGCAATTCTTGTCTTGTTGGCTCATATATTTTATACTATTCTCAATGTTAATGCAATTCTCTCCATTCTCCTGTCCTCATTCACTGGATTTGGGATTACACTCAGTATGAATTCTCTCGTTACGGAATTTATTAGATGGAGAGCAAATAGGCAGATTCAGTCTTCCAATGAGAATGTTAACAGTAACAGGACAGACAGAGCAGCAGTGCCGTGA 1629 0.4322 MINLIVKRKATVGKQNRRRRCELSGKEKREGVSNRSSEVALSLGTAFRWFDNLMEKRGAVSDAELQTVLDPTQTKICGDGNEKGSLIPQSRRPTLSSLQIPAWSLDIALSSFAKTDGPSPSISLSSPGSTARGLPPRPNSAKARPSMKSLLPQRSLRTKASPQDVERTVLIVPDTPSSDAPLEKPSTSRSLSLNSRVITPPSTKAVHSLPVTPFATSGAENVHGKRLGCDSGFSTIEIQQHITRSLSVPVNGKGTKLRRTDSRCLFRVISAQPHLETVVATSTDDASVPKTAVEDASEDIPEEEAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQTASRQPSNVPQQREVAYYRHDLAGCTGTYLGQHACLLLLPRATTGMLFFVHVQKFMVSDLGPRALAISLPFSCVLGLLSSMISSTMVSRTYVWAYACFQFAILVLLAHIFYTILNVNAILSILLSSFTGFGITLSMNSLVTEFIRWRANRQIQSSNENVNSNRTDRAAVP. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00038 542 CDD RING_CH-C4HC3_MARCH 307 355 - -
Seca8g00038 542 SMART ringv_2 306 355 IPR011016 GO:0008270
Seca8g00038 542 PANTHER OS02G0165000 PROTEIN 71 535 - -
Seca8g00038 542 MobiDBLite consensus disorder prediction 115 133 - -
Seca8g00038 542 MobiDBLite consensus disorder prediction 115 193 - -
Seca8g00038 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 362 IPR013083 -
Seca8g00038 542 Pfam RING-variant domain 307 354 IPR011016 GO:0008270
Seca8g00038 542 SUPERFAMILY RING/U-box 303 358 - -
Seca8g00038 542 ProSiteProfiles Zinc finger RING-CH-type profile. 299 361 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00038 Seca-Chr8 593689 600986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00038 284 361 C3H Transcription Factor Family AT2G37950 41.975 4.22e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00038 - - gmx:100789461 639.032