Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00027 ATGGTTGAAGAAAGAGGCATTGCACATTCCTGCACAGAGTGCGGGAAGAAGTTCTGGTCTTCCAAGGCTCTGTTTGGCCACATGCGATGTCACCCGGAGCGTCAATGGAGAGGGATCAATCCTCCACCCAATTTCAGAAGGCCACAACACCAACAGATAATAATGACTCAAGAGGATCACGAGGTTGCCGCTTGTTTGCTCTTACTTGCAAATGCAAATGCAAATGAAAAGGGAAAAGGTACTACTAGTTATAATTACGTGGTGGAGTCTCCGAGTCAGAGCAATGTTTCCAGTACTCATTTTGAGTGCTCCAGTTGCAACAAGGTCTTTGGATCACACCAGGCTCTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTTGCCAATGCCATAACAACAACAACCAAGACCACTGACACTAGTACCACATCTTCCACTATAGGAGAAGGGGATCCAGATGCAGCAGATGAAAGTGGAGGCCACAAGTGTAGCATATGCCTTAGGGTATTCCCCACTGGTCAAGCCCTTGGTGGTCACAAGAGGTGTCACTGGGAGAAAGGGGATAATGCAGCATCCTCCATCATTGACTCTGCACCCAAGTCTCTTGTTGACTTGAATTTGCCTCCTCTTGATGGTGATGATCATGATTGTTCCTCTTCCCTTACTCTCGATTTGAGGTTGGGACTTTAA 699 0.4707 MVEERGIAHSCTECGKKFWSSKALFGHMRCHPERQWRGINPPPNFRRPQHQQIIMTQEDHEVAACLLLLANANANEKGKGTTSYNYVVESPSQSNVSSTHFECSSCNKVFGSHQALGGHRASHKNVKGCFANAITTTTKTTDTSTTSSTIGEGDPDAADESGGHKCSICLRVFPTGQALGGHKRCHWEKGDNAASSIIDSAPKSLVDLNLPPLDGDDHDCSSSLTLDLRLGL. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00027 232 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Seca8g00027 232 Gene3D Classic Zinc Finger 3 65 - -
Seca8g00027 232 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 6 232 - -
Seca8g00027 232 MobiDBLite consensus disorder prediction 140 160 - -
Seca8g00027 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 186 IPR013087 -
Seca8g00027 232 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Seca8g00027 232 Gene3D Classic Zinc Finger 98 186 - -
Seca8g00027 232 SMART c2h2final6 164 186 IPR013087 -
Seca8g00027 232 SMART c2h2final6 9 31 IPR013087 -
Seca8g00027 232 SMART c2h2final6 101 123 IPR013087 -
Seca8g00027 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Seca8g00027 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Seca8g00027 232 SUPERFAMILY beta-beta-alpha zinc fingers 9 123 IPR036236 -
Seca8g00027 232 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Seca8g00027 232 Pfam C2H2-type zinc finger 8 33 - -
Seca8g00027 232 Pfam C2H2-type zinc finger 164 188 - -
Seca8g00027 232 Pfam C2H2-type zinc finger 100 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00027 Seca-Chr8 471422 472177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00027 7 232 C2H2 Transcription Factor Family AT4G35280 52.500 6.77e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g00027 zf-C2H2_6 1.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00027 - - vun:114195192 240.736