Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00026 ATGGAATATGGTGCGTTGGTGCAGGATTCAGCGTTTGGGAGCTTGTCAGAGTGTGGCTCAGTGACGGTTACAGAAACAGATATGGTTGATGAGTTGTTGGTAGAAGGTTGTTGGGTGGAAGCCAGTGCAGGATCCTACAACATGCAGCAGCAGCAGGCATGTGATCAGTACTCCTCCTCCACCAATCAGTTCCAACAAGACGAAACTAATTTTGTGGTTGGGAAGAGATGGTGGATTGGGCCAAGGGCAACAAATCCAGGTCCATCTTCCTCCGTGAAAGAGAGATTAGTGGTTGCGGTTGGGTACTTAAAAGAATACACAAAGAACGCCAATGTACTCATTCAGATATGGGTACCGTTACGAAGAGGACTTCACTACCACACAAATAATGTTGTAACCACCAACAATCCAGATCATGATGATTCTGTTTCGGTTGTTAGTTTTCCCATGAGCCCCAACGCCAGTCCAAACCCAAACGTAACCGTTCGCTTCTTTAGAAGCCACGAGTACCCGCGCGTCGTTCAACCGCACCAATACGGATCTCTAGCCCTTCCTGTCTTTGAAAGAGGCACTGCCACATGCCTTGGTGTCCTCGAGATTGTTATGACTAACCAAACCATCATCCATTACCGCCCCCAACTTGACAATGTCTGCAATGCTCTCGAGGCTGTTGATTTTAGAACTAGTCAGAACTACATTCCTCCTGCCGTAAAGGTATTTGACGAACTGTACCAAGCAGCACTGAATGAGATCGTGGAGGTGTTGACGTCGGTGTGCAAGACTCACAATCTGCCTTTAGCACTGACTTGGGCTCCTTGCATCCAACAAGGGAAGTGTGGGTGTGGGGTTTCAAGTGATCAGAATTACGTGTGCTGCGTGTCCACCGTGGATTCCGCGTGTTTTGTGGCGGATCTGGATATATTGGGATTCCAAGAAGCGTGCTCTGAGTATCACCTTTTCCGTGGACAGGGAATAGTTGGCACAGCCTTCACAACAACCAAACCGTGTTTTGCGATGGACATAACCGCTTTTAGCAAAACCGAATATCCTCTGGCTCACCATGCAAAAATGTTTGGATTGCATGCCGCTGTGGCGATTCCTCTAAGGAGTGTCTACACAGGATCAGCTGATTTTGTTTTGGAGTTTTTCTTACCAAAGGATTGTCATGACAGCGAAGAGCAGAAGCAGATGCTGCACTCATTATCCATGGTGGTACAACAAGCTTGCCGAAGCTTGCATGTGGTGATGGAGGATGACTTCACTTTACCTCACAGTAGTAAAGAAGAAATTGCTCCTCATCATCATGATCAGAAACTATTTGCATCTCCCTCACAGTCACAAGTAGAAGCATGTTCCAAAGAATCATCATCGTCATGGATTGCACATATGATGGAGGCACAGCAAAAGGGGAAAGGCGTGTCTGTGTCGTTGGAATATCTGGAAGAGCCAAAAGAGGAGTTCAAAGTGACAACAAACTGGGACACCAGTACGGATCAGGATCAGCATGCACAGACGCAGGTGTTTTCAGATTTTGGTCAACTTGAGCAAAGTTCAGGGTCAAGATTCAAAGCAAGCGTGGAAGGTGGGGAAGAATCTTATACATTTGGTGGCCGCCGTTCATCTTCTGGTGGCAGAAAACCAGGTGAGAAGCGACGGACAAAGGCAGAGAAGACTATTAGCTTGCCAGTTCTGAGACAATACTTTGCAGGAAGCTTGAAAGATGCAGCAAAGAGCATTGGTGTGTGTCCTACAACTCTGAAAAGGATATGTAGACAGCATGGCATTACAAGGTGGCCTTCAAGGAAAATCAAGAAGGTAGGGCACTCTTTAAAGAAACTTCAACTGGTGATTGATTCAGTTCAGGGTGCTGAAGGTGCCATACAGATTGGGTCCTTCTATGCAAGTTTTCCAGAGTTAAGCTCTGCAGATTTCTCTGCCAGTCGGCGTTCTGAATCATCGAAGAAAATGATGAATGGTTATCCAGAGAACAGCTTGTATGGCCATGGAGATGGAATCACCAGTTTGAAATCCCCACCTTCTGCTTGCAGTCAGAATTTTGGTCCAACCAACAACCAATCTTCCACGATCATCACTAACAATGGGGATGTTCTAATGACAGAAAGCCCTGCTCCTCCTCCTCATACTGATGCAGCATTGCTGAGGAGAGTTCACAGTGAGGCAGAGTTATTGCATGCATCGATCCAATTAGAGGATACAAAACATTTCACGACTAGAGCCAAGAGCCAACAAACTCTATTACCTCCCTTGTCTGAAAGTAGTGGGTGGAACTCACTAGAAAGGGGTGCTTTCAGAGTCAAAGCTACTTTTGCGGATGAGAAAATCCGTTTTAGCTTGCAACCGATGTGGGGCTTCAGAGATTTGCAGCTTGAGATTGCAAGAAGGTTCAATCTAAACGACGTTAGCAACATGGTGCTCAAGTATTTGGATGATGATGGAGAGTGGGTGGTTTTAGCATGCGATGCTGATCTTGAGGAGTGTAAAGACTTGCATAGATCATCTCAGAGCCGCACAATTAGACTCTCCTTATTTCAAGCTTCGCCTCTTAATAATACGTTCCGCAACAGCAGCAGCCCATCCTAA 2601 0.4625 MEYGALVQDSAFGSLSECGSVTVTETDMVDELLVEGCWVEASAGSYNMQQQQACDQYSSSTNQFQQDETNFVVGKRWWIGPRATNPGPSSSVKERLVVAVGYLKEYTKNANVLIQIWVPLRRGLHYHTNNVVTTNNPDHDDSVSVVSFPMSPNASPNPNVTVRFFRSHEYPRVVQPHQYGSLALPVFERGTATCLGVLEIVMTNQTIIHYRPQLDNVCNALEAVDFRTSQNYIPPAVKVFDELYQAALNEIVEVLTSVCKTHNLPLALTWAPCIQQGKCGCGVSSDQNYVCCVSTVDSACFVADLDILGFQEACSEYHLFRGQGIVGTAFTTTKPCFAMDITAFSKTEYPLAHHAKMFGLHAAVAIPLRSVYTGSADFVLEFFLPKDCHDSEEQKQMLHSLSMVVQQACRSLHVVMEDDFTLPHSSKEEIAPHHHDQKLFASPSQSQVEACSKESSSSWIAHMMEAQQKGKGVSVSLEYLEEPKEEFKVTTNWDTSTDQDQHAQTQVFSDFGQLEQSSGSRFKASVEGGEESYTFGGRRSSSGGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSADFSASRRSESSKKMMNGYPENSLYGHGDGITSLKSPPSACSQNFGPTNNQSSTIITNNGDVLMTESPAPPPHTDAALLRRVHSEAELLHASIQLEDTKHFTTRAKSQQTLLPPLSESSGWNSLERGAFRVKATFADEKIRFSLQPMWGFRDLQLEIARRFNLNDVSNMVLKYLDDDGEWVVLACDADLEECKDLHRSSQSRTIRLSLFQASPLNNTFRNSSSPS. 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00026 866 CDD PB1_NLP 770 851 IPR034891 -
Seca8g00026 866 ProSiteProfiles RWP-RK domain profile. 545 626 IPR003035 -
Seca8g00026 866 PANTHER PROTEIN NLP8 52 857 IPR045012 GO:0003700
Seca8g00026 866 Pfam PB1 domain 770 851 IPR000270 GO:0005515
Seca8g00026 866 SUPERFAMILY CAD & PB1 domains 759 854 - -
Seca8g00026 866 MobiDBLite consensus disorder prediction 519 555 - -
Seca8g00026 866 ProSiteProfiles PB1 domain profile. 769 852 IPR000270 GO:0005515
Seca8g00026 866 Gene3D - 768 854 - -
Seca8g00026 866 SMART PB1_new 769 852 IPR000270 GO:0005515
Seca8g00026 866 Pfam RWP-RK domain 559 606 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00026 Seca-Chr8 431344 435777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00026 74 853 NLP Transcription Factor Family AT4G35270 47.557 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca8g00026 PB1 6e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00026 - - cam:101498016 1005.74