Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g00018 | ATGGGAATTTGCTGGGGTTCTCCACCTCACGACCCAACCCCAACGGGAACCGTCAAGTCTGTTTTTCCTTGCTCTTGTTTCTCCTATGTAGCTACACCGGCGACATCCCTGTCCCAGGCCCAGTCCCAGACGACCAACAGCAGCTATACTACTACTTCTTCTGGAAGTGGGACCAGTTCCATAAATAGCAAGTTCTCCGTGTCAAGTGGTGACGAAACTTATCCCGGTGGTCAGATCCTAGCTACCTCTAATTTGAGGATCTTCACTTTTGCGGAGTTGAAGGCTGCAACTAGGAATTTCAGAGCTGATACACTACTTGGAGAGGGTGGTTTTGGAAAAGTCTACAAGGGTTGGCTTGAAGAGAGGGCCTCGTCAAAGAGTGGAAGTGGAACAGTCATTGCCGTAAAAAAATTGAACTCAGAAAGCTTACAAGGAATTGAGGAGTGGCAGTCAGAAGTACATTTTCTAGGACGCCTTTCTCATCCTAATCTGGTTAAGCTGTTGGGATACTGCTTGGAGGAAACAGAGCTTCTACTTGTATATGAATTCATGCAGAAGGGCAGTCTGGAAAATCATCTATTTGGAAGAGGCTCTGCTGTTCAGCCACTTCCTTGGGACATCAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCATACATCTGAGAAAGTAATTTACAGAGATTTCAAGGCCTCCAATATTTTGCTTGATGGGTCGTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCTGCTAGTCAATCCCATGTGACAACAAGGGTGATGGGCACATATGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTAAAGAGCGACGTGTATGCGTTTGGAGTTGTTTTGGTTGAGATCCTAACTGGCCTACGAGCGCTTGATCCCAACCGTCCAAGTGGGCAACATAATCTAACAGATTGGGTCAAACCATACCTACAAGATAGAAGAAAATTGAAGAGCATCATGGATTCTCGATTGGAAGGAAAATATCCATCCAAAGCTGCTTTTCGTATAGCTCAGCTTGCTTTAAATTGTCTTGCATCTGAGCCCAAACATCGGCCATCAATGAAGGAAGTTTTGGAGAGCTTGGAGCGAATTCAAGCTGCCAATGAGAAACCTGTGGAGCCCAAGTTCCGCTCTACTCATTCCCATGCTTCCCAACAGGCTGTACACCACCGTTCTCCACTTCATCCAAATCCAAGGCATGATCGTTCATGA | 1266 | 0.4605 | MGICWGSPPHDPTPTGTVKSVFPCSCFSYVATPATSLSQAQSQTTNSSYTTTSSGSGTSSINSKFSVSSGDETYPGGQILATSNLRIFTFAELKAATRNFRADTLLGEGGFGKVYKGWLEERASSKSGSGTVIAVKKLNSESLQGIEEWQSEVHFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYAFGVVLVEILTGLRALDPNRPSGQHNLTDWVKPYLQDRRKLKSIMDSRLEGKYPSKAAFRIAQLALNCLASEPKHRPSMKEVLESLERIQAANEKPVEPKFRSTHSHASQQAVHHRSPLHPNPRHDRS. | 422 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g00018 | 421 | PANTHER | OS01G0588500 PROTEIN-RELATED | 48 | 383 | - | - | |
Seca8g00018 | 421 | ProSitePatterns | Protein kinases ATP-binding region signature. | 106 | 137 | IPR017441 | GO:0005524 | |
Seca8g00018 | 421 | FunFam | Serine/threonine-protein kinase BIK1 | 67 | 183 | - | - | |
Seca8g00018 | 421 | Pfam | Protein tyrosine and serine/threonine kinase | 103 | 379 | IPR001245 | GO:0004672|GO:0006468 | |
Seca8g00018 | 421 | Gene3D | Transferase(Phosphotransferase) domain 1 | 184 | 406 | - | - | |
Seca8g00018 | 421 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 228 | 240 | IPR008271 | GO:0004672|GO:0006468 | |
Seca8g00018 | 421 | SUPERFAMILY | Protein kinase-like (PK-like) | 84 | 408 | IPR011009 | - | |
Seca8g00018 | 421 | Gene3D | Phosphorylase Kinase; domain 1 | 84 | 183 | - | - | |
Seca8g00018 | 421 | MobiDBLite | consensus disorder prediction | 386 | 421 | - | - | |
Seca8g00018 | 421 | CDD | STKc_IRAK | 106 | 382 | - | - | |
Seca8g00018 | 421 | FunFam | Serine/threonine-protein kinase PBS1 | 184 | 398 | - | - | |
Seca8g00018 | 421 | ProSiteProfiles | Protein kinase domain profile. | 100 | 382 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g00018 | 421 | MobiDBLite | consensus disorder prediction | 40 | 61 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g00018 | Seca-Chr8 | 346244 | 349598 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g00018 | 76 | 387 | Receptor kinase-like Gene Family | AT4G02010 | 50.316 | 2.41e-103 | 320 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Seca8g00018 | PK_Tyr_Ser-Thr | 1.1e-49 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g00018 | - | - | gmx:100305417 | 677.167 |