Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00018 ATGGGAATTTGCTGGGGTTCTCCACCTCACGACCCAACCCCAACGGGAACCGTCAAGTCTGTTTTTCCTTGCTCTTGTTTCTCCTATGTAGCTACACCGGCGACATCCCTGTCCCAGGCCCAGTCCCAGACGACCAACAGCAGCTATACTACTACTTCTTCTGGAAGTGGGACCAGTTCCATAAATAGCAAGTTCTCCGTGTCAAGTGGTGACGAAACTTATCCCGGTGGTCAGATCCTAGCTACCTCTAATTTGAGGATCTTCACTTTTGCGGAGTTGAAGGCTGCAACTAGGAATTTCAGAGCTGATACACTACTTGGAGAGGGTGGTTTTGGAAAAGTCTACAAGGGTTGGCTTGAAGAGAGGGCCTCGTCAAAGAGTGGAAGTGGAACAGTCATTGCCGTAAAAAAATTGAACTCAGAAAGCTTACAAGGAATTGAGGAGTGGCAGTCAGAAGTACATTTTCTAGGACGCCTTTCTCATCCTAATCTGGTTAAGCTGTTGGGATACTGCTTGGAGGAAACAGAGCTTCTACTTGTATATGAATTCATGCAGAAGGGCAGTCTGGAAAATCATCTATTTGGAAGAGGCTCTGCTGTTCAGCCACTTCCTTGGGACATCAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCATACATCTGAGAAAGTAATTTACAGAGATTTCAAGGCCTCCAATATTTTGCTTGATGGGTCGTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCTGCTAGTCAATCCCATGTGACAACAAGGGTGATGGGCACATATGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTAAAGAGCGACGTGTATGCGTTTGGAGTTGTTTTGGTTGAGATCCTAACTGGCCTACGAGCGCTTGATCCCAACCGTCCAAGTGGGCAACATAATCTAACAGATTGGGTCAAACCATACCTACAAGATAGAAGAAAATTGAAGAGCATCATGGATTCTCGATTGGAAGGAAAATATCCATCCAAAGCTGCTTTTCGTATAGCTCAGCTTGCTTTAAATTGTCTTGCATCTGAGCCCAAACATCGGCCATCAATGAAGGAAGTTTTGGAGAGCTTGGAGCGAATTCAAGCTGCCAATGAGAAACCTGTGGAGCCCAAGTTCCGCTCTACTCATTCCCATGCTTCCCAACAGGCTGTACACCACCGTTCTCCACTTCATCCAAATCCAAGGCATGATCGTTCATGA 1266 0.4605 MGICWGSPPHDPTPTGTVKSVFPCSCFSYVATPATSLSQAQSQTTNSSYTTTSSGSGTSSINSKFSVSSGDETYPGGQILATSNLRIFTFAELKAATRNFRADTLLGEGGFGKVYKGWLEERASSKSGSGTVIAVKKLNSESLQGIEEWQSEVHFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYAFGVVLVEILTGLRALDPNRPSGQHNLTDWVKPYLQDRRKLKSIMDSRLEGKYPSKAAFRIAQLALNCLASEPKHRPSMKEVLESLERIQAANEKPVEPKFRSTHSHASQQAVHHRSPLHPNPRHDRS. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00018 421 PANTHER OS01G0588500 PROTEIN-RELATED 48 383 - -
Seca8g00018 421 ProSitePatterns Protein kinases ATP-binding region signature. 106 137 IPR017441 GO:0005524
Seca8g00018 421 FunFam Serine/threonine-protein kinase BIK1 67 183 - -
Seca8g00018 421 Pfam Protein tyrosine and serine/threonine kinase 103 379 IPR001245 GO:0004672|GO:0006468
Seca8g00018 421 Gene3D Transferase(Phosphotransferase) domain 1 184 406 - -
Seca8g00018 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Seca8g00018 421 SUPERFAMILY Protein kinase-like (PK-like) 84 408 IPR011009 -
Seca8g00018 421 Gene3D Phosphorylase Kinase; domain 1 84 183 - -
Seca8g00018 421 MobiDBLite consensus disorder prediction 386 421 - -
Seca8g00018 421 CDD STKc_IRAK 106 382 - -
Seca8g00018 421 FunFam Serine/threonine-protein kinase PBS1 184 398 - -
Seca8g00018 421 ProSiteProfiles Protein kinase domain profile. 100 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00018 421 MobiDBLite consensus disorder prediction 40 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00018 Seca-Chr8 346244 349598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00018 76 387 Receptor kinase-like Gene Family AT4G02010 50.316 2.41e-103 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca8g00018 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00018 - - gmx:100305417 677.167