Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00016 ATGCAGCTAGTAGCCTACCATAGCCACAGGTTCTGGATGATTCTGCTATGCCTTGCATTAACATTGATCCTATTACATGGAAGGGAAGAAGCTTCCAGTTCCAGATATGATGTCGTCAAAATCGGTGCCATTTTCACATTAAAAACTATAAACGGTCGAGTTTCCAAAATTGCCATCGAAGCTGCTGAGAAAGATGTGAATTCCGACCCTCACATCTTGGGTGGACGTAAATTGTCCATAGCCATCCATGATTCCAACTTCAGTGGTTTCCTTGGCTTTATTGGGGCCCTCAAGTTCTTGGTGACTGATACGGTAGCTATAATTGGTCCTCAAAGTTCAGTAATGGCTCATGTGCTTTCACATCTTGCAAATGGGCTCCATGTTCCTCTACTGTCCTTCACTGCTCTGGATCCCACCCTAACACCTCTTCAGTATCCTTTTTTTGTCCAAACAGCACCCAATGATCAGTTCCAGATGACTGCAGTTGCTGACATAATTAGTTATTTTGGTTGGAGACAAGTTATTGCAATTTTCAGTGATGATGATCAGAGTCGAAATGGGATAACTGTATTAGGTGATAAACTTGCTGACAGGCGCTGTAAGTTGTCTTATAAAGCAGCACTTCCCCCTGATCCAACCGCCACTCCAACTGATGTTGCTGATCAGTTGGTGAAGATTAAAAGCATGGAAGCTCGAGTAATTGTTTTAAACACCTTCAAGCAAACAGGCATGATGGTTTTTGATGTTGCTCAAAAACTAGGGATGATGAGCAAAGGGTATGTTTGGATAGCTACTTCTTGGCTATCAACTGTTTTGGATTCTACTTCACTAGCACTAAATACTTCTAACTCAATTCAAGGAGTTCTTACACTTCGCCCTCACACCCCTCAGTCAAGTAAAAAACAGGCCTTTATCTCAAGGTGGAACCACTTAAGTAATGGCTCAATTGGGTTAAGTCCATATGGACTATATGCTTATGATTCTGTTTGGATGATTGCTCATGCATTAAAATTGTTTTTTGATCAGAATGGAACCATTTCATTCTCAAATAATACAAAATTAAATGGTATGAGGGGAGATACTCTGGATCTTGGTGCTTTGAACGTTTTTGATGGAGGGAAACAATTACTTGATAACATATTGCACATTAATATAACAGGGTTGACAGGACCTATTCAATTTGGTTCAGACAGATCCCCTTTACATCCATCATATGACATCCTTAATGTAATTGGTACTGGTCATAGGAGACTTGGATACTGGTCTAATTATTCAGGGCTCTCTGTAATAACCCCTGAGAAACTTCAAACAAAACCTGCCAATCGTTCAAGTTCCAACCAGCATCTAGATGGTGTTATATGGCCTGGAAATACAACAGAAATGCCTCGTGGATGGGTTTTCCCAAATAATGGAAGGCAACTGAGAATTGGAGTTCCAAACAGAGTTAGTTATAGAGACATGGTCTCACAAATAAATGGCACTGATGCAGTACAAGGATATTGCATAGATATATTCCTTGCTGCCATAAAATTGCTTCCATATGCAGTTCAGTATAGGTTCATTCTGTTTGGAGATGGACATAAGAACCCAAGCTACTATGATCTTGTTAATATGATTACTTCTGATGCTTTTGATGCTGCTGTGGGTGACATAGCTATTGTTACTAACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCAGGTTTAGTTGTGGTTGCTCCAGTTAAAAAGTTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCATTTACTCCACAGATGTGGGGTGTCACTGCACTTTTTTTCCTCGTTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACAAATGATGAGTTTCGGGGCCCTCCAAAGAAGCAGATAGTTACCACCCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGTAAGTCCAGCCATTTTGACAGTTCATGA 1965 0.4056 MQLVAYHSHRFWMILLCLALTLILLHGREEASSSRYDVVKIGAIFTLKTINGRVSKIAIEAAEKDVNSDPHILGGRKLSIAIHDSNFSGFLGFIGALKFLVTDTVAIIGPQSSVMAHVLSHLANGLHVPLLSFTALDPTLTPLQYPFFVQTAPNDQFQMTAVADIISYFGWRQVIAIFSDDDQSRNGITVLGDKLADRRCKLSYKAALPPDPTATPTDVADQLVKIKSMEARVIVLNTFKQTGMMVFDVAQKLGMMSKGYVWIATSWLSTVLDSTSLALNTSNSIQGVLTLRPHTPQSSKKQAFISRWNHLSNGSIGLSPYGLYAYDSVWMIAHALKLFFDQNGTISFSNNTKLNGMRGDTLDLGALNVFDGGKQLLDNILHINITGLTGPIQFGSDRSPLHPSYDILNVIGTGHRRLGYWSNYSGLSVITPEKLQTKPANRSSSNQHLDGVIWPGNTTEMPRGWVFPNNGRQLRIGVPNRVSYRDMVSQINGTDAVQGYCIDIFLAAIKLLPYAVQYRFILFGDGHKNPSYYDLVNMITSDAFDAAVGDIAIVTNRTKIVDFTQPYIESGLVVVAPVKKLKSSAWAFLRPFTPQMWGVTALFFLVVGAVVWILEHRTNDEFRGPPKKQIVTTLWFSFSTMFFAHSKSSHFDSS. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00016 654 FunFam Glutamate receptor 154 311 - -
Seca8g00016 654 SMART GluR_14 475 638 IPR001320 GO:0015276|GO:0016020
Seca8g00016 654 Pfam Ligand-gated ion channel 595 645 IPR001320 GO:0015276|GO:0016020
Seca8g00016 654 Gene3D - 465 584 - -
Seca8g00016 654 Pfam Ligated ion channel L-glutamate- and glycine-binding site 489 576 IPR019594 GO:0004970|GO:0016020
Seca8g00016 654 FunFam Glutamate receptor 469 585 - -
Seca8g00016 654 SUPERFAMILY Periplasmic binding protein-like II 452 598 - -
Seca8g00016 654 Gene3D - 154 427 - -
Seca8g00016 654 Pfam Receptor family ligand binding region 57 412 IPR001828 -
Seca8g00016 654 Gene3D - 585 653 - -
Seca8g00016 654 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 640 IPR015683 -
Seca8g00016 654 SUPERFAMILY Periplasmic binding protein-like I 35 466 IPR028082 -
Seca8g00016 654 CDD PBP1_GABAb_receptor_plant 40 429 IPR044440 -
Seca8g00016 654 Gene3D - 57 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00016 Seca-Chr8 310986 315499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00016 11 649 Ion Channels AT4G35290 61.682 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00016 K05387 - gmx:100793969 1100.89