Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00014 ATGGGCAACACATGCCGTGGATCTTTGAAAGGAAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCCTTCATCAAAGCGCAACAATCATTCTGATCGCTCTTCCGACTCAGAGAACCACCTCAAACAAAATCCCAATTCTGCATCAGATAACAACGACAACAATCTACCCTTGAGCTTGAAGAAAGAAGTCATCATGCGCCGAGGCCTTGATAATCAAGCATATTATGTCTTGGGTCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGTAAATTGGGACAGGGGCAATTTGGTACCACTTATTTATGCACCGAGAATTCCACCTCCATTGAATATGCATGCAAATCCATCTCCAAGAGGAAATTGATTTCCAAGGAGGACGTGGAGGATGTTAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAAGAACATTGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTTCATATTGTCATGGAGCTTTGTTCTGGGGGTGAATTGTTTGATCGCATCATCCAGAGGGGTCACTATTCCGAGAGGAAGGCTGCAGAATTGACCAAAATTATTGTTGGAGTTGTTGAGGCTTGTCATTCCCTTGGGGTTATGCACAGGGATCTCAAGCCTGAAAACTTTTTGTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCTATTTTCTTCAAACCAGGTCAAGTTTTCACTGATGTAGTTGGCAGCCCGTACTATGTGGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGACGTGTGGACAGCAGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCTCCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCTGTATTGAAGGGACATATAGATTTTGACTCAGATCCATGGCCTCTAATATCTGATAGTGCAAAAGATCTGATTAGAAAGATGCTGTGTTCTCGGCCTTCAGAACGGTTGACTGCTCATGAAGTCTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCTGACAGATCACTGGACCCTGCTGTTCTTTCCCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAAATGGCTTTACGGGTAATTGCTGAAAGTCTATCTGAAGAGGAGATCGCTGGTTTGAGAGAAATGTTTAAGGCTATGGATACTGATAACAGTGGTGCCATCACCTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTAAAGGATATAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAGGAACACCTCATTGCAGCATTCCAATATTTTGACAAGGACGGGAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGATCATAACATGACTGATGTTTTTCTTGAAGATATTATTAGGGAAGTCGATCAAGATAATAATAGTAATTCCATGGAGATCTGA 1560 0.425 MGNTCRGSLKGKYIQGFSQPEDPSSKRNNHSDRSSDSENHLKQNPNSASDNNDNNLPLSLKKEVIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSIFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSAKDLIRKMLCSRPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFKAMDTDNSGAITFDELKAGLRRYGSTLKDIEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACADHNMTDVFLEDIIREVDQDNNSNSMEI. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00014 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Seca8g00014 519 Gene3D Phosphorylase Kinase; domain 1 91 174 - -
Seca8g00014 519 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00014 519 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Seca8g00014 519 PANTHER SERINE/THREONINE-PROTEIN KINASE 81 513 - -
Seca8g00014 519 FunFam Calcium-dependent protein kinase 5 175 355 - -
Seca8g00014 519 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00014 519 SUPERFAMILY Protein kinase-like (PK-like) 73 371 IPR011009 -
Seca8g00014 519 Pfam EF-hand domain 467 492 IPR002048 GO:0005509
Seca8g00014 519 FunFam Calcium-dependent protein kinase 1 91 174 - -
Seca8g00014 519 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Seca8g00014 519 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Seca8g00014 519 Gene3D - 363 456 - -
Seca8g00014 519 MobiDBLite consensus disorder prediction 1 56 - -
Seca8g00014 519 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00014 519 Gene3D - 373 513 - -
Seca8g00014 519 CDD STKc_CAMK 89 346 - -
Seca8g00014 519 MobiDBLite consensus disorder prediction 25 39 - -
Seca8g00014 519 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Seca8g00014 519 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Seca8g00014 519 FunFam Calcium-dependent protein kinase 1 355 517 - -
Seca8g00014 519 Pfam EF-hand domain pair 395 455 IPR002048 GO:0005509
Seca8g00014 519 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Seca8g00014 519 SMART efh_1 466 494 IPR002048 GO:0005509
Seca8g00014 519 SMART efh_1 430 458 IPR002048 GO:0005509
Seca8g00014 519 SMART efh_1 394 422 IPR002048 GO:0005509
Seca8g00014 519 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Seca8g00014 519 SUPERFAMILY EF-hand 376 513 IPR011992 -
Seca8g00014 519 Gene3D Transferase(Phosphotransferase) domain 1 175 357 - -
Seca8g00014 519 MobiDBLite consensus disorder prediction 40 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00014 Seca-Chr8 292059 302787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00014 1 513 EF-hand Containing Proteins AT2G17290 84.630 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g00014 Pkinase 4.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00014 K13412 - gmx:100778173 955.281