Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00007 ATGGATAACGAGGTGCTAGAATTTGATATTGGGCTGGGGGGAGGCGAGGGAGAATACGACGACGATGGAGGGGAAATAGAACACCCTATTGATGAGGAGGAATTGGCTGATAGCAGTGGTGTAGCCACTGGTGGTGGTGAAATTTATTTTCCCGAGGGGGACCTCTTAGATCTTGAACCTTACGAGGGCATGGAATTCGAGTCTGAGGAGGCTGCCAAGGCCTTCTATAATTCCTATGCTCGTCGTGTTGGGTTTAGTACTCGTGTCAGCTCATCCCGTCGTTCCAGGCGCGATGGAGCTATTATACAGAGGCAATTTGTTTGCGCAAAGGAAGGGTTCCGCAACTTGAATGAGAAACGCACCAAAGATAGAGAGATCAAGCGCCCTCGAACCATTACCAGAGTGGGATGCAAAGCGTCCTTGTCTGTCAAAATGCAAGATTCTGGAAAGTGGATCGTATCTGGGTTTGTTAGAGAACATAATCACGAACTGGTTCCACCAGATCAGGTGCATTGTCTTCGCTCTCACAGGCAAATATCAGGAGCGGCCAAGACGCTGATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGAATCATGTCAGCACTCATCAAAGAGTATGGTGGGATTAGCAAAGTCGGGTTTACAGAGGTTGACTGTAGGAATTACATGAGGAATAATCGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTGGATTATTTGAGACAAATGCATGCCCAAAACCCTAATTTCTTCTATGCTGTGCAAGGTGATGAGGATCAGTCCATAAACAATGTTTTTTGGGCTGATCCCAAGGCAAGGATGAACTATACATTTTTTGGTGATACCGTAACTTTTGACACTACTTACCGCTCTAATAGATATCGGTTACCATTTGCTCCCTTTACTGGGGTAAATCATCATGGACAACCTGTTCTCTTTGGTTGTGCTTTCCTAATTAATGAATCTGAAGCATCATTTGTGTGGCTTTTCAAGACATGGCTTATGGCCATGTGTGGACGCCCGCCAGTGTCAATAACAACTGATCATGATTCTGTAATTCGGTCAGCCATAATACAAGTATTCCCTGAGACCCGCCACCGTTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAATTATCTCACATTTTCCTCAAATATCCAAATTTTGAAGCAGAATTTCACAAATGTGTTAACTTGACTGAGTCAGTTGAGGAATTTGAGTCTTTCTGGTCAACACTTGTAGATAGATATGATCTCAGAGACCATGAATGGCTTCAAGCAATACATTCTGCTTGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATAACTCAGCGGAGTGATAGCATGAACTCTTACTTTGATGGGTATGTAAATGCTTCAACCAATTTAAATCAGTTCTTCAAGCTGTATGAGAAAGCACTTGAAAGTCGCAATGAGAAAGAAGTGAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTATACACAAGAAAAATTTTCATGAGGTTCCAAGAGGAGTTAGTTGGGACACTAACATTCATGGCATCCAAAGCTGAAGAAGATGGGGAGGTCATTACATATCATGTAGCTAAATTTGGGGAGGACCATAAAGCGTACTACGTTAAATTCAATGTTTTGGAGATGAAAGCCACTTGTAGTTGCCAAATGTTTGAGTTTTCTGGCCTTCTTTGCAGACATGTTTTGGCAGTCTTTAGAGTTACCAATGTCCTTACTCTCCCATCTCATTATATATTGAAACGTTGGACAAAAAATGCCAAGAGCAATGTAATATTAGAAGAACATTCTTGTGATTTATACACTCACTATTTGGAATCTCATACAGTTAGATATAACACCCTCCGACATGAGGCCTTTAAATTTGTTGACAAAGGTGCAAGCTGTCCTGAAACTTACGATGTTGCAATGGATGCTTTACAAGAAGCTGCAAAAAGAGTTGCTCTGGTAATGCAAAACAAGGGGAGAATTCCTGTCAGCAATGGAAAGGTTAGGGGTCGCTTGCTGAATGATGAAAGTCATACTAATTACTCAAGTGGATACCAGGAAGAAAGCTTGGGTCAGCATATGTCTAAGGATGATATGGATAAGCATATCAGAAAACTTATGAATGAGCTTGAGTGTGCAAATCGGAAGTGTGAAATTTACCGGTCCAACCTGCTCTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTTAAGGTGGAAAACATCAAGATAAGCATGAAAGATGGCTTCTGA 2349 0.4223 MDNEVLEFDIGLGGGEGEYDDDGGEIEHPIDEEELADSSGVATGGGEIYFPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAQNPNFFYAVQGDEDQSINNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMCGRPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTESVEEFESFWSTLVDRYDLRDHEWLQAIHSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKAEEDGEVITYHVAKFGEDHKAYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTKNAKSNVILEEHSCDLYTHYLESHTVRYNTLRHEAFKFVDKGASCPETYDVAMDALQEAAKRVALVMQNKGRIPVSNGKVRGRLLNDESHTNYSSGYQEESLGQHMSKDDMDKHIRKLMNELECANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGF. 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00007 782 Pfam MULE transposase domain 287 380 IPR018289 -
Seca8g00007 782 ProSiteProfiles Zinc finger SWIM-type profile. 567 603 IPR007527 GO:0008270
Seca8g00007 782 SMART 26again6 578 605 IPR006564 GO:0008270
Seca8g00007 782 Pfam SWIM zinc finger 555 601 IPR007527 GO:0008270
Seca8g00007 782 Coils Coil 725 752 - -
Seca8g00007 782 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 681 IPR031052 GO:0006355
Seca8g00007 782 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g00007 782 Pfam FAR1 DNA-binding domain 75 166 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00007 Seca-Chr8 234799 240909 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g00007 MULE 5.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00007 - - gmx:100793442 1424.45