Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08558 TCAGAGTCTAGTTCAGCATGTGAGGCAGCTGCAGGCCTTCTGCGATCATTATCTTCGGTCAATCTATATAGGAATTCTGTAGCAGACAGTGGTGCAATAGAAGAGTTAAATAGACTTCTGAGTCAATCTTCCTTGGCAACTGAGGTAAAGGAGCAAAGTATGAGTACACTGTGGAATTTATCTGTGGACGAGAAGCTCTGCATTAAAATTGCAAAGAGTGATATTCTGCTGTTAGCTATTAAGTATCTTGATGACGAGGATATGAAAGTGAAGGAAGCTGCAGGAGGCATTTTGGCAAATTTAGCACCGAGCCGTGCTAATCACAACATCATGGTTGAAGCAGGTGTTATACCGAAATTGGCAAAGTTCTTAACGTCGAACTCAGAAGGATCTAAAGTCATTAGAAAGGAAGCAAGGAATGCATTGCTGGAACTTGTTAAGGATAAGTATTATAGAATTCTTGTTATTGAGGAAGGTTTGGTTCCTGTGCCGTTAATAGGTGCTGCAGCCTATAAGTCATTCAATCCACGTTTACATTTGTGGCCCACATTACCAGATGGTACAGAAATTGAAAGGGCTTCTAGTCAACCTTCCAGATTTGGTTCATCAGAATTACTTCTTGGATTAAATATTGATGACGAGAATGCTAACATAGAGGAAGCAAAAATCAATGCAATTATTGGACGGACACAACAACAATTCCTTGCTCGTATTGGGGCTATAGAAATGGAAGAAAAGACAATACCTCATTCTGAATGCTCAAATGATCAGCGGCTTACACTTTTACCTTGGGTGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACAGGAAGATCAATCAGCCATATTAAGAGCTTCAGAGTCAATTGCTAGTGCATGTATCAACGAACATATGCGTATTGCATTCAAGGAGGCTGGGGCAATTAAGCATTTAGTACGGCTTTTGACTTGTGATGATAATGCGGTCCAGTTAGCGGTAACACAAGCTTTGGAAAGGTTGTCTGCTAGCAATGTTGTTTGCCGAGTAATTGAAGCTGAGGGTGTTTTAGGTCCTTTAGTCAGTATTTTGAAACGCTCAGAGATATCTGAAACTATTGTGGAAAAGTCTTTGAACATACTTGCGCGGATATTAGACCCCAGCAAAGAGATGCAATTGAAGTTTTATGATGGATCAGTTAATGTATCTGAGAAGGCATTTGGTGGACCCAAAACTGATGATATCTCAACAGGATTAAGTAGCACTGAGCAAGCCGAATCAAAAACAAATACTAGGAATGATATACTAAATTCTGTTTTCATTGCAAACCTTGTTGAGATTCTAAAGTCCTCTTCACCCAATATACAAGAAAAGGCTGCATCTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTTGACCCAATAATATCTGTGGATATTGAAAATGGTCTCAATTCTGCTTTTCAGCAAAAAATTTTCAAAATTTCAGGTAAAAAATTTCTGCTCTTTAATGTGTGA 1500 0.3933 SESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEELNRLLSQSSLATEVKEQSMSTLWNLSVDEKLCIKIAKSDILLLAIKYLDDEDMKVKEAAGGILANLAPSRANHNIMVEAGVIPKLAKFLTSNSEGSKVIRKEARNALLELVKDKYYRILVIEEGLVPVPLIGAAAYKSFNPRLHLWPTLPDGTEIERASSQPSRFGSSELLLGLNIDDENANIEEAKINAIIGRTQQQFLARIGAIEMEEKTIPHSECSNDQRLTLLPWVDGVARLVLILEQEDQSAILRASESIASACINEHMRIAFKEAGAIKHLVRLLTCDDNAVQLAVTQALERLSASNVVCRVIEAEGVLGPLVSILKRSEISETIVEKSLNILARILDPSKEMQLKFYDGSVNVSEKAFGGPKTDDISTGLSSTEQAESKTNTRNDILNSVFIANLVEILKSSSPNIQEKAASVLEFVALTDPTLDPIISVDIENGLNSAFQQKIFKISGKKFLLFNV. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08558 499 Gene3D - 251 477 IPR011989 -
Seca7g08558 499 Gene3D - 1 174 IPR011989 -
Seca7g08558 499 Pfam Armadillo/beta-catenin-like repeat 296 336 IPR000225 GO:0005515
Seca7g08558 499 SUPERFAMILY ARM repeat 5 379 IPR016024 -
Seca7g08558 499 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 31 64 IPR000225 GO:0005515
Seca7g08558 499 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 488 - -
Seca7g08558 499 SMART arm_5 63 103 IPR000225 GO:0005515
Seca7g08558 499 SMART arm_5 19 62 IPR000225 GO:0005515
Seca7g08558 499 SMART arm_5 337 379 IPR000225 GO:0005515
Seca7g08558 499 SMART arm_5 296 336 IPR000225 GO:0005515
Seca7g08558 499 SMART arm_5 104 147 IPR000225 GO:0005515
Seca7g08558 499 SMART arm_5 421 461 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08558 Seca-Chr7 190532881 190536592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08558 10 167 U-box Gene Family AT5G67340 32.099 3.57e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08558 - - gmx:100793128 785.793