Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08546 ATGGCTTTAGAGCAGCAATTATCGCTAGGCCAGAATACCAACTTAGTTGACGGCGAAGCTGACGGAAACACTAACGGCGTCGATGGTCGGCCGGCGTCGACGGATGGCGGAGATGATGGAGGCAAAGCGCCGAGATTGCCTCGGTGGACAAGACAGGAGATTCTGGTTCTGATACAGGGAAAGAGAGACGCAGAAAATAAGTTTAGGAGGGGCCGCACCGCAGGTTTGCCATTCGGGTCGGGTCAGGTGGAGCCCAAATGGGCATCTGTGTCATCGTACTGCAGAAAGCATGGAGTGAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAATCTCAGATAAGGGAGGAGACGGAGTCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGCCTGGATTTTTCGACAAGGAGGTCTATGATATTCTAGATTCAGGGTCGCAGGCGGCGCCGGCGTTAGCTCTAGCTCTGTCATCGCCTGCGGCAACTGTAACAGAGCCAGCGGACCAGGGCAAAGGTAAGGACAAGGACAGCAAAAGAGTGGCGGACGAAGCTGAGGCTTGCACTGAGCCACACATGTATGATAGTAACAGGAGCGCCGCCGGTGAAGATGGCTTATTCTCAGATTTTGAACAAGAAGAAGTGGGTGCCACTGCCAGTCCCGAGAAGAAGGATGTTTTGGCTTCCTCCAAAGACATTCCTGCTCCTATTCCTATCTCAGAGAAGCAATATCAACCACTCCTCCGTGCCTGCCAGGTTGAAGGTAATGCTCAAGGTGTGACAAACGAGAAACAGCCAACTTCAAATCCAGAAATGGGATCTACATCTCAAGGAGAACGGAAAAGGAAGCGATTAGCAACCGATGGAGAGGAGGAAACTTTGCAATATCAATTAATTGATGTCTTAGAAAGAAATGGCAAAATGCTAAGCACTCAACTTGAAGCACAAAATATAAATTTCCAGTTGGATCGCGAGCAACGGAAAGACTACGCATGTAACTTGGTTGCTGTACTTGATAAGCTTGCAGGTGCTCTAGGGAGAATAGCTGATAAATTGTAG 1107 0.4923 MALEQQLSLGQNTNLVDGEADGNTNGVDGRPASTDGGDDGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLRRERKLPGFFDKEVYDILDSGSQAAPALALALSSPAATVTEPADQGKGKDKDSKRVADEAEACTEPHMYDSNRSAAGEDGLFSDFEQEEVGATASPEKKDVLASSKDIPAPIPISEKQYQPLLRACQVEGNAQGVTNEKQPTSNPEMGSTSQGERKRKRLATDGEEETLQYQLIDVLERNGKMLSTQLEAQNINFQLDREQRKDYACNLVAVLDKLAGALGRIADKL. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08546 368 MobiDBLite consensus disorder prediction 175 219 - -
Seca7g08546 368 MobiDBLite consensus disorder prediction 185 207 - -
Seca7g08546 368 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g08546 368 CDD GT1 47 121 - -
Seca7g08546 368 Gene3D - 49 119 - -
Seca7g08546 368 MobiDBLite consensus disorder prediction 1 48 - -
Seca7g08546 368 MobiDBLite consensus disorder prediction 275 291 - -
Seca7g08546 368 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 19 368 - -
Seca7g08546 368 MobiDBLite consensus disorder prediction 275 305 - -
Seca7g08546 368 ProSiteProfiles Myb-like domain profile. 48 114 IPR001005 -
Seca7g08546 368 Pfam Myb/SANT-like DNA-binding domain 48 137 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08546 Seca-Chr7 190301081 190304165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08546 38 122 Trihelix Transcription Factor Family AT1G76890 27.059 8.79e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca7g08546 Myb_DNA-bind_4 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08546 - - pcin:129308058 546.969