Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08542 ATGGGCTGTTTTTCGTGTTTCGATTCGAAGGAGGATGAGAAGCTCAATCCTAATACTCAGCAGGAACCCCATCATCATGATCATGATCATGATCGTGATCATAATCTCCCTGCACATATTTCCAGACAGCCCTCCGCCTCTGGAGCAGACAAGCTACGCTCAACAAGTAATGGAGCCTCCAAAAGGGAATTGCCTGGTCTCAAGGACGGACCAGCTGTCCAAATTGCCGCTCAAACTTTTACTTTCCGTGAACTTGCAGCAGCAACCAAAAACTTCAGGCCCCAGTGCTTTTTAGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGGCGACTGGAAACCACGGGTCAGGTTGTTGCTGTTAAACAGTTAGACAGAAACGGTCTACAGGGTAATCGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTTCACCACCCTAACCTTGTGAATCTCATTGGATACTGTGCGGATGGGGACCAACGGCTCCTAGTTTATGAATTTATGCCATTGGGATCATTGGAAGACCATCTTCATGATCTTCCCCCTGATAAGGAGCCATTAGATTGGAACACTAGGATGAAAATAGCTGCTGGTGCGGCAAAAGGATTGGAATACCTACATGACAAGGCAAATCCTCCAGTCATTTATAGGGACTTCAAGTCATCTAATATATTACTTGATGAAGGTTTTCATCCAAAGCTTTCTGACTTTGGTCTAGCAAAGCTTGGTCCTGTCGGTGACAAATCACATGTTTCCACCCGAGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAACTGACTGTGAAATCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATCACTGGCCGTAAAGCCATTGACAGCACCCGGCCCCATGGAGAACAAAACCTTGTCTCATGGGCACGTCCATTGTTCAATGACCGCAGGAAGTTTCCAAAGTTGGCAGATCCACGGCTGCAGGGGCGTTATCCCATGCGGGGTCTTTATCAAGCACTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCAGCAGCACGTCCTCTGATTGGGGATGTGGTAACTGCCCTCTCTTATCTGGCCAACCAGGCATATGACACCAACAGTGATAAAAGGATCAGAGATGATAAAGGTGGAAAAATATTGAAAAATGATGAAGGTGGAGGATCCGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCACGTGAAACTGCGAGGATGTTAAACAGGGATCTTGATAGAGAACGTGCAGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGACAAAATGTGCAGGGCAGTTTTGATGGTTCTAATGCCTAG 1377 0.4706 MGCFSCFDSKEDEKLNPNTQQEPHHHDHDHDRDHNLPAHISRQPSASGADKLRSTSNGASKRELPGLKDGPAVQIAAQTFTFRELAAATKNFRPQCFLGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVSWARPLFNDRRKFPKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAYDTNSDKRIRDDKGGKILKNDEGGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQNVQGSFDGSNA. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08542 458 PANTHER OS07G0668900 PROTEIN 3 378 - -
Seca7g08542 458 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Seca7g08542 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca7g08542 458 MobiDBLite consensus disorder prediction 379 424 - -
Seca7g08542 458 Gene3D Phosphorylase Kinase; domain 1 76 168 - -
Seca7g08542 458 MobiDBLite consensus disorder prediction 47 61 - -
Seca7g08542 458 CDD STKc_IRAK 98 366 - -
Seca7g08542 458 Gene3D Transferase(Phosphotransferase) domain 1 169 391 - -
Seca7g08542 458 MobiDBLite consensus disorder prediction 7 38 - -
Seca7g08542 458 Pfam Protein kinase domain 98 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08542 458 MobiDBLite consensus disorder prediction 1 67 - -
Seca7g08542 458 ProSiteProfiles Protein kinase domain profile. 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08542 458 SUPERFAMILY Protein kinase-like (PK-like) 73 366 IPR011009 -
Seca7g08542 458 FunFam Serine/threonine-protein kinase PBS1 66 168 - -
Seca7g08542 458 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08542 Seca-Chr7 190263181 190271392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08542 1 446 Glycoside Hydrolase AT3G07070 57.206 3.73e-174 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca7g08542 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08542 K13430 - gmx:100777987 806.208