Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08520 ATGTATCCCTCTTCCTCTTCGGCTTCCTCGTCGTCCTCAACCCAGCAACAGCAAAGCTCCATCAGCCACACGGGCTTAACCCGCTACGGTTCCGCCCCAGGGTCTCTGCTAACTAGCACCGTCGATGCAGTGATTGGTGGATCGCGGTTTCTAGCAGGCCCAGGCCCAGGCCAAGGACATGGGCATGGGCATTACTACTCAGGAGACTCTTCAGAGCCCAGCTGCAAAGAGCAGAGATCTTCTTCTCCTTATGAGCCTTTTCCTGGATCCGCCTTGCTCCGTCAAAAAAGCTCCCCCGCGGGCTTCCTCTCCCATCTCGCCAACACTTCAACTCATAATGCGGGCTTCACAATCACGAGGGGCAGCTCGCGATTGAAGTCTGAATTGAGCTTCACGGGACAAGGACAAGGTCAAGAATGTCTTTCTAGGATATCTGAAGGTGTGGTTGATCCAACTTCCGACCACACTACATCTACACCTACTTATGCTGGCACTGCCTTTGGAATCCAACCGTCCTGCTCTTGGGACAATTCTAATTCCATAGTGTTTTCTGCTCCTCAATCTAAGCGTTCTAAACCGAACGATCCCGACATTCTACATTGCCTCACTGCCCTTGAATCTCAGTTTAGTCTGCCACAAACAACTCTCGAAATGGCAACCGTTGACAAGTTATATATTCCTGAAGATTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCTACTCATCCTCGTAGTATTGCTGAAAGGGAGAGAAGAACTAGGATAAGTGGGAGGTTGAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGTTATGCAGACATGCTGGATTTGGCCGTTCAACATATTAAAGGTCTTCAAAGTCAAGTTCAGAAGCTTCAGAAAGAACTTGAGGGTTGCACTTGCGGATGCAAACAAATGCAATGCTTTACTGGATCTGATGTTCTCAAATGGAGATCTTTCTATGAAACACATGATCATGCTTGGAGATGCCATTATAGTGAGATGTTTGATAATGGTATTCGCGAGACTTTGTGTTGTCTAGGCCGGGTCAAATACTTGACTGCATTGGACGAAGATGAAGTCTATTCAGTTGCACGATTGTTAGGTGATCTTGTTGCTTATCGTGCTTCGGGAACTGGGCACATGGAACTCTTGGCAGCTTTAGCTTTACTTCAAAGCAATGGAAAATCTTCAGAAACCTATGAATTATCCATTGAAGCACCAGAGATGCGGATTAGGGAGGCTGCAGCTCTCCATAAATTTGCTGAAGCTGCATACACAGGTCCATTGCTTGATGTTGGACGAAATCCTTTCATATTCCCTTGTGCATGGCTCTACAGACAAGGAATTTTGTCTCCTTGGGCACGCAATAGGCGACCTGTATTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGTTCTTAGACATGGGCGAGTCAAACAGGTCAAGTGTGAAGCTGCATATTTCATTGTGGTTCTCCATCATCTACAGTCTGTAATAATTGCTATACGTGGAACTGAAACCCCTGAGGACCTAATAATGGATGGATTATGCAAGGAATGCACCCTTTCTCCAGAAGACTTGGCTGGTTTGATAAACTGCAACCACATTCAATCTGATATGAAGAATAATGTAGCTTCATCATTCCCCCACTATGGGCATTCAGGTATAGTCGAAGCTGCACGAGAGGTTTTTATGCAGATTGAAGGAAATCCTGAAGAGCATGACTCTGAATCCCACGGGTTTCTTTCTAAATTACTGGGAGTTGGTTGTGAGTGCTTTGGGTATAATGTCCGCATTGTTGGGCATTCACTTGGGGGCGCTATAGCTGCATTGCTTGGACTGCAACTTTATAACCGCTACCCTAATCTGCATGTTTACTCATATGGGCCACTCCCGTGTGTGGATTTTGTTGTGGCAAATGCATGTTCAGAATTTGTAACAAGCATTATATTTGGAAATGAGTTTTCATCACGCCTTTCAATTGGATCCGTTATGAGGCTAAGGGCAGCTGCAATCACATCACTATCACAAGATCCTAAAGCGGATAGTGCCATGATTTTTAGACTTGCCCGCCGCTCTCTGTATTTAAGCAAATATCAGAGAAATAGGACGGAGGCAGAGAATGAAAGCCAGTGTGAGATTGATAATAAAGGAAGCAACGGACAAGAAGTTCAAGAAGTTTCACTCTGGACTGAGACTACTAAATCAGATCTTCTTGTTACAGCTGACGATGGCAACAATGAGCATGAAGAACTTTCACTCTGGACTGACACCAGGGCAAGCGACCATATTGTTGAAATTGATAATGCTGAATTTATGAATCCTTTTGCTGTAGACGCAAATCCAATGGATGATCCTGTGTCTCAGTTTATAGATACAGTTCCAAATTCTGAAAATCAGTCCGCTGGTGATCCCCCAGAGATGTATCTGCCAGGATTTGTAATTCATATTGTACCAGAGCAGAAAAGATCTCTCACTGATCTTAAGATATCTTGGAGTATGCAGGAGAGGGGAAAATGTTATAGAGCTTACATAGCAAACAGAGAAAGCTTCAAAGATATTATTGTTTCACCATCCATGTTCCTTGATCATCTCCCTTGGAGGGTCAAATGTTCAACTTTCAGATGTCATGATGCCTTGCAAAAAATATTGAAAGCTCAAACTGCTAAAGATCGAGGAATGGAACCTCATATAATCTGA 2757 0.444 MYPSSSSASSSSSTQQQQSSISHTGLTRYGSAPGSLLTSTVDAVIGGSRFLAGPGPGQGHGHGHYYSGDSSEPSCKEQRSSSPYEPFPGSALLRQKSSPAGFLSHLANTSTHNAGFTITRGSSRLKSELSFTGQGQGQECLSRISEGVVDPTSDHTTSTPTYAGTAFGIQPSCSWDNSNSIVFSAPQSKRSKPNDPDILHCLTALESQFSLPQTTLEMATVDKLYIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGRLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQSQVQKLQKELEGCTCGCKQMQCFTGSDVLKWRSFYETHDHAWRCHYSEMFDNGIRETLCCLGRVKYLTALDEDEVYSVARLLGDLVAYRASGTGHMELLAALALLQSNGKSSETYELSIEAPEMRIREAAALHKFAEAAYTGPLLDVGRNPFIFPCAWLYRQGILSPWARNRRPVLDGDNWWRGHAAAFLKYVNLPPEVLRHGRVKQVKCEAAYFIVVLHHLQSVIIAIRGTETPEDLIMDGLCKECTLSPEDLAGLINCNHIQSDMKNNVASSFPHYGHSGIVEAAREVFMQIEGNPEEHDSESHGFLSKLLGVGCECFGYNVRIVGHSLGGAIAALLGLQLYNRYPNLHVYSYGPLPCVDFVVANACSEFVTSIIFGNEFSSRLSIGSVMRLRAAAITSLSQDPKADSAMIFRLARRSLYLSKYQRNRTEAENESQCEIDNKGSNGQEVQEVSLWTETTKSDLLVTADDGNNEHEELSLWTDTRASDHIVEIDNAEFMNPFAVDANPMDDPVSQFIDTVPNSENQSAGDPPEMYLPGFVIHIVPEQKRSLTDLKISWSMQERGKCYRAYIANRESFKDIIVSPSMFLDHLPWRVKCSTFRCHDALQKILKAQTAKDRGMEPHII. 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08520 918 Gene3D - 242 313 IPR036638 GO:0046983
Seca7g08520 918 CDD bHLH_AtbHLH_like 246 299 IPR045239 -
Seca7g08520 918 CDD Lipase_3 472 679 - -
Seca7g08520 918 Pfam Lipase (class 3) 518 663 IPR002921 GO:0006629
Seca7g08520 918 SUPERFAMILY alpha/beta-Hydrolases 481 672 IPR029058 -
Seca7g08520 918 SMART finulus 247 297 IPR011598 GO:0046983
Seca7g08520 918 Coils Coil 715 735 - -
Seca7g08520 918 MobiDBLite consensus disorder prediction 1 33 - -
Seca7g08520 918 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 291 IPR011598 GO:0046983
Seca7g08520 918 PANTHER LIPASE CLASS 3 FAMILY PROTEIN 294 911 - -
Seca7g08520 918 MobiDBLite consensus disorder prediction 71 85 - -
Seca7g08520 918 Pfam Helix-loop-helix DNA-binding domain 246 292 IPR011598 GO:0046983
Seca7g08520 918 FunFam Transcription factor bHLH130 family 242 311 - -
Seca7g08520 918 Coils Coil 281 301 - -
Seca7g08520 918 Gene3D alpha/beta hydrolase 483 684 IPR029058 -
Seca7g08520 918 MobiDBLite consensus disorder prediction 52 88 - -
Seca7g08520 918 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 308 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08520 Seca-Chr7 190034775 190054913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08520 25 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 44.729 2.47e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g08520 Lipase_3 6e-09 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08520 - - gmx:100814512 989.564