Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08508 ATGATTTCAAATTCTAGGATAAATGGAAACTACGAAACTTCAGATTCTAGTGAAACCAATTTTGAATTTGGTTCATCAAAACGTGCAAGGTATGAGGAAAATGCAGGGTGTCACAAGTTCAAAGGAGTTGTTCCTCAACAAAATGGGCATTGGGGTGCACAAATATATGCAAACCATCAAAGAATTTGGTTGGGGACTTTCAAATCTGAAGTAGAGGCTGCAATGGCTTATGATAGTGCCACCATTAAGCTTAGAAGCGGAGAAAGCCATAGAAACTTTCCATGGAATGATAAAACGGTTCATGAGCCTCAGTTTCAAAGTCATTATAGTGCAGAATCAGTGTTGAGCATGATAAGAAATGGCACATACCCTTCTAAATTTACTTCATTTCTCATGACACAAAGCCAAGGCCAAGAAGGTGTTGGAATTGGTGCCAAACATGTAAGAATGAAGGGTGAGGAACAATTCTCTTGCACCCAACTTTTTCAAAAAGAATTAACACCAAGTGATGTAGGTAAGCTTAATAGGCTTGTCATACCCAAAAAACATGCAGTTACCTATTTTCCTTGTGTTTATGGTAGTACAGAAGCTAATGTTGAAATGGATGGTGGGTGTGTTGACATTGAGGTTGTCTTTTATGACAAGCTTATGAGATTATGGAAATTTAGATATTGCTATTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGAGGCTGGAATCGGTTTGTGAAGGATAAGAAATTAAAGGCTAAAGACATCATTGCATTTTATATTTGTGAGCCTATAAATTGGAGAAAAGGGGGACAGAGAGAAGAAGTGTTTTCATTGATTGATGTGATCTATAATGTAGATGAGAGAATGCAGTGCTTTGAAGAAACAAAAGGAGATCCAAAACAAAATTTGGGTAAGGTAATTTGCAGTGAAGTGGAAGATGAAGATGAAAATGAAAACCAAGAAACCATGGACAGAAATGCACTTCATTCAGCAGATAATGCACAAGGAGGTTTGAGGCTTTTTGGTGTAAGTATCAATTGA 1035 0.3739 MISNSRINGNYETSDSSETNFEFGSSKRARYEENAGCHKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEVEAAMAYDSATIKLRSGESHRNFPWNDKTVHEPQFQSHYSAESVLSMIRNGTYPSKFTSFLMTQSQGQEGVGIGAKHVRMKGEEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPCVYGSTEANVEMDGGCVDIEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYICEPINWRKGGQREEVFSLIDVIYNVDERMQCFEETKGDPKQNLGKVICSEVEDEDENENQETMDRNALHSADNAQGGLRLFGVSIN. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08508 344 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Seca7g08508 344 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Seca7g08508 344 ProSiteProfiles B3 DNA-binding domain profile. 162 280 IPR003340 GO:0003677
Seca7g08508 344 SUPERFAMILY DNA-binding pseudobarrel domain 160 261 IPR015300 -
Seca7g08508 344 Gene3D - 157 274 IPR015300 -
Seca7g08508 344 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Seca7g08508 344 CDD B3_DNA 161 257 IPR003340 GO:0003677
Seca7g08508 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 342 IPR044800 GO:0003700
Seca7g08508 344 FunFam AP2 domain-containing protein RAP2.8 38 95 - -
Seca7g08508 344 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Seca7g08508 344 SMART B3_2 162 268 IPR003340 GO:0003677
Seca7g08508 344 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g08508 344 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Seca7g08508 344 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Seca7g08508 344 Pfam B3 DNA binding domain 162 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08508 Seca-Chr7 189910367 189911401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08508 35 343 RAV Transcription Factor Family AT1G50680 52.424 1.20e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g08508 B3 4.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08508 K09287 - gmx:102660503 408.297