Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08499 ATGAGTCTTACTATTCTTACCCTTCTGGCACTCTCCTCCTACATCTCTGCCCAGAATGTCAGTATTGGTGAGACACTTGTTGCAGGTAACACTGATTCTCCATGGCTTTCTCCATCAGGAGATTTTGCATTAGGATTTCATCAACTTGAAAATAACAACCTTTTCTTGGTCGCCATATGGTACAACAAAATACCTGACAAAACTCTCATATGGTACGTAAATGGAGACAACCCTGCTCCTAAAGGATCCAAACTAGTCCTAACTCAACACGGAGGACTAGTCCTAACCACCCCTCATCAAGATGCTGAAATTTGGAGATCACAATCCATATCAGGCGCCATTTCCTATGGACTAATGAATGACACTGGCAACTTTCAGCTCTTTGATAAGAATTCACAAGTCTTGTGGGACACTTTCAGACTCCCAACTGATACCTTGCTACCAACTCAAATCATGGATGTCAAAGGCACCCTCTCATCTCGACAAAAAGAGACCAACTTCTCACGAGGAAGGTTTCAATTTCGTTTGCTTGAAGATGGTAATGCTGTGCTCAATCCTATAAACTTGCCTACCAACTATACTTATGATGCTTACTACATCAGTGGCACCCGTGATGCTTCCAATGACACAAACTCTGGTTACCGTGTGGTTTTTGATGAATCGGGCTTCTTGTATATACTGAGAAAGAGTGGTGAGAGGTTTGATATCACAAGCCCCAATGATGTTCTCTCAACTGATTCCTACTATTATAGAGCAACCATCCATTATGATGGTGTTTTCACCATATCACATCACCCTAAAAGTCCAAGTGTGAATCAAAGCTGGACAGTGGTTAAGACATTGCCAGATAACATTTGCATAGATTTGAGAGGAGAAAACGGTTGTGGGGTGTGTGGATTCAACAGCATCTGCACTCTCAAAACTGATCAGAGACCAATCTGTAGGTGCCCAGAAGGGTATTCTCTTCTTGATTCAACTGATGGGTTTGGTAGCTGTATACCAAATTTGCAACTTGGTTGTGATGGAAGTGGACAGAGCTCACAAGAAGATCTATACTTCATGAAGGAATTGCCAAATACGGATTGGCCTGTATCTGATTATGAATTGTATAAACCTTACAATTTAGAAGATTGTAGGAGTGCTTGCTTGCAAGATTGCTTATGTGCTGTTTCTATATTTAGAGGTGATAGCTGCTGGAAGAAGAAGATTCCTCTCTCAAATGGAAGAGAGGATAGAGCAGTTGGGGGATTTGCTTTCATTAAATTGAGGAAAAACAATGATTCATTGGGAATTCCTCAGACTCCATTCACTGAACAACAGAAGAAATATACCAAAGATCAAGATACTTTGATAACTGTCATATCAGTCCTTCTAGGTGGATCTGTCTTTGTCAATTTCATGCTGTTCAGTGCAGTGTGCATTGGTTTCTTCTTCTACAACAACAGAAAAAACTCAACCAAGAAAGGTGTTGCCGAGAGCAACTTGCGGAGTTTCACTTTTGGGGAGCTTGTGCAAGCAACAAACAACTTCAAAGAAGAATTGGGAAGAGGGTCTTGTGGGGTTGTGTTTAAAGGAATTGTTGATTTGACTACTATAGCAGTCAAGAAATTGGATAAAGTGTTGAAAGAGAGTGATAAGGAATTCAAAACAGAAGTGAATGTGATAGGCCAAACTCATCATAAGAACTTGGTTCGCCTTCTTGGATATTGTGATGAGGGAGAACACAGGATTCTAGTGTATGAGTTCTTGAGCAATGGGACATTAGCAAGCTTCCTTTTTGATGATTTCAAACCAAATTGGAACCAGAGAGTCCAAATTGCATTTGGGATTGCAAGAGGGCTTGTTTACTTGCATGAGGAGTGTTGCACCCAGATCATCCATTGTGACATAAAGCCACAAAACATACTTCTTGATGAGTATTACAATGCAAGAATATCAGATTTTGGGTTAGCAAAGCTACTGAGGATTAACCAAAGCCACACAGAAACTGGTATTAGAGGAACAAAAGGGTATGTTGCACCAGACTGGTTCAGGAGTGCACCAATCACTGTCAAGGTTGATGTTTACAGCTTTGGTGTGTTGCTTCTAGAGATCATTTGCTGTAGAAGAAATGTAGATTCTGACATTGGGGATGAAGAGAAGATCATTTTAACTGATTGGGCTTATGACTGCTATAAGGCTGGAAGAATTGACATGTTGGTTGACAATGATAATGAAGCTATCAATGACATGAAGAAGTTGGAAAGGTTTGTGATGGTAGCTATTTGGTGTCTTCAGGAAGATCCCTCTCTCAGGCCAACCATGAAAATGGTTATGTTGATGTTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTGCCCTTTTACTTCTGTTTCTGTTATTTGA 2391 0.4065 MSLTILTLLALSSYISAQNVSIGETLVAGNTDSPWLSPSGDFALGFHQLENNNLFLVAIWYNKIPDKTLIWYVNGDNPAPKGSKLVLTQHGGLVLTTPHQDAEIWRSQSISGAISYGLMNDTGNFQLFDKNSQVLWDTFRLPTDTLLPTQIMDVKGTLSSRQKETNFSRGRFQFRLLEDGNAVLNPINLPTNYTYDAYYISGTRDASNDTNSGYRVVFDESGFLYILRKSGERFDITSPNDVLSTDSYYYRATIHYDGVFTISHHPKSPSVNQSWTVVKTLPDNICIDLRGENGCGVCGFNSICTLKTDQRPICRCPEGYSLLDSTDGFGSCIPNLQLGCDGSGQSSQEDLYFMKELPNTDWPVSDYELYKPYNLEDCRSACLQDCLCAVSIFRGDSCWKKKIPLSNGREDRAVGGFAFIKLRKNNDSLGIPQTPFTEQQKKYTKDQDTLITVISVLLGGSVFVNFMLFSAVCIGFFFYNNRKNSTKKGVAESNLRSFTFGELVQATNNFKEELGRGSCGVVFKGIVDLTTIAVKKLDKVLKESDKEFKTEVNVIGQTHHKNLVRLLGYCDEGEHRILVYEFLSNGTLASFLFDDFKPNWNQRVQIAFGIARGLVYLHEECCTQIIHCDIKPQNILLDEYYNARISDFGLAKLLRINQSHTETGIRGTKGYVAPDWFRSAPITVKVDVYSFGVLLLEIICCRRNVDSDIGDEEKIILTDWAYDCYKAGRIDMLVDNDNEAINDMKKLERFVMVAIWCLQEDPSLRPTMKMVMLMLEGIAPVTIPPSPCPFTSVSVI. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08499 796 SMART serkin_6 508 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08499 796 Gene3D Transferase(Phosphotransferase) domain 1 583 782 - -
Seca7g08499 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 26 788 - -
Seca7g08499 796 Gene3D Phosphorylase Kinase; domain 1 475 582 - -
Seca7g08499 796 CDD B_lectin 20 139 IPR001480 -
Seca7g08499 796 ProSiteProfiles Bulb-type lectin domain profile. 11 140 IPR001480 -
Seca7g08499 796 Gene3D - 141 271 IPR036426 -
Seca7g08499 796 SMART blect_4 17 142 IPR001480 -
Seca7g08499 796 Gene3D - 15 139 IPR036426 -
Seca7g08499 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Seca7g08499 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 15 140 - -
Seca7g08499 796 Pfam Protein kinase domain 510 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08499 796 Pfam D-mannose binding lectin 68 155 IPR001480 -
Seca7g08499 796 ProSiteProfiles Protein kinase domain profile. 508 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08499 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 190 IPR036426 -
Seca7g08499 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 782 - -
Seca7g08499 796 PIRSF SRK 1 795 IPR024171 GO:0004674
Seca7g08499 796 FunFam S-receptor-like serine/threonine-protein kinase 479 582 - -
Seca7g08499 796 CDD STKc_IRAK 514 778 - -
Seca7g08499 796 SUPERFAMILY Protein kinase-like (PK-like) 484 776 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08499 Seca-Chr7 189830446 189832836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08499 490 777 Receptor kinase-like Gene Family AT1G60800 43.919 2.36e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca7g08499 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08499 - - gmx:100811299 1248.42