Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08487 ATGCGTCGGTGGCTGTGTTGCACCTGTCAGGTGGAAGAATCTTACCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACTCAAAAGGGTCAAAGGTGTCAGCTCCTGTCAAGCCTGAAACACAAAAGGCACCACCACCTATTGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAAAAGACTGACAACTTTGGATCAAAGGCATTGATTGGCGAAGGATCATATGGAAGGGTGTATTATGCAACCTTAAACGATGGAAAAGCTGTGGCTGTGAAGAAGCTTGATGTTTCATCTGAACCTGAATCAAATAATGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGATAATTTTGTTGAGTTGCAAGGTTACTGTGTTGAAGGAAATCTTCGTGTTCTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCATGGTAGAAAGGGAGTTCAAGGGGCACAGCCAGGTCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGACGCAGCAAGGGGATTAGAATATTTGCATGAGAAAGTTCAACCACCAATTATACACAGAGATATCAGATCTAGTAATGTGCTTATCTTTGAAGATTACAAGGCGAAGATAGCTGATTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTGTTGGGAACTTTTGGATATCATGCTCCAGAATATGCCATGACTGGCCAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGGGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGATCATACCATGCCAAGAGGACAGCAAAGTCTTGTTACATGGGTAGGTTTACTTGCTTAA 900 0.4211 MRRWLCCTCQVEESYPSNENEHLKSPRNYGDGNSKGSKVSAPVKPETQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNDGKAVAVKKLDVSSEPESNNEFLTQVSMVSRLKNDNFVELQGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWVGLLA. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08487 299 FunFam PTI1-like tyrosine-protein kinase 3 33 147 - -
Seca7g08487 299 SMART tyrkin_6 71 298 IPR020635 GO:0004713|GO:0006468
Seca7g08487 299 Gene3D Transferase(Phosphotransferase) domain 1 149 298 - -
Seca7g08487 299 PIRSF ILK 12 296 - -
Seca7g08487 299 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 148 298 - -
Seca7g08487 299 MobiDBLite consensus disorder prediction 14 54 - -
Seca7g08487 299 Gene3D Phosphorylase Kinase; domain 1 43 147 - -
Seca7g08487 299 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 295 - -
Seca7g08487 299 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Seca7g08487 299 ProSiteProfiles Protein kinase domain profile. 71 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08487 299 Pfam Protein tyrosine and serine/threonine kinase 76 283 IPR001245 GO:0004672|GO:0006468
Seca7g08487 299 SUPERFAMILY Protein kinase-like (PK-like) 50 288 IPR011009 -
Seca7g08487 299 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08487 Seca-Chr7 189653172 189657774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08487 5 295 Receptor kinase-like Gene Family AT4G02010 48.464 3.49e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca7g08487 PK_Tyr_Ser-Thr 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08487 K13436 - gmx:548003 589.341