Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08471 ATGCCGGAGCTTCGTAGTGGAGTGCGACGTGGTCGTGCTGCGGCGGTAGGCCAGAAAGACTCGGAACCGGCGAAGAGGAACGTGAAGACTCGTGCTGCAGTCCCGGCAGCAGAGAAGGGGAGGCCAAGGACTAGATTGGCGGCGAAGAAATTGGAGCGCGAAAAGCCTCCGATCCCGACACCGGAACCTGTTAGTGATAAAGAACGCGCAAAGAACAAGAAAGAAGGTGCAGGCGTGATGGGTGATGAAAGTGGTGGGTTGAGTGCTAATAAGGGTGCTTCACCAGAGGAAGATGCGAACACCCCACCTTTTCCAGAGAGGGTTCAAGTAGGAGGATCACCTGTCTACAAGGTAGAGAGGAAACTTGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGTCGTCGCGAGCGTGCTTCAGGCCCTGGAGCTATGGAGGTTGCTCTTAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCCCCTTACGAGTGGCAAGTATACAACACCCTCGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGTTTGTGGGATGTCTGGAATTCCTCAAGTCAGACGACTGGTCACAGGTTTGAGTCGTGGAATCAGCCTCTTGCAAATGCAAGGATGTCTGCTGAAATGGTCTCATGTATAGCTGTTGAATCCTTATCGATACTTGAAAAGATGCATTCAAGAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTGGGTCAGCCAGCTACACCGCAAGAGAAGAAACTATTTCTTGTTGACCTTGGGTTAGCAACAAAGTGGAAAGACTCCTCCACTGGACTGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCGTACACACTGATCTTCCTTCATAAAGGCCGATTACCATGGCAGGGTTATCAGGGTGATTCCAAATCCTTCCTTGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATTCTGTGCTGCTTTTGCCCTGCTCCTTTTAAGCAATTCCTTGAGAATGTCGTCAACATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATTTCCTTGTTTGATGGTGTGATCGGACCCAATCCAGCATTGCGGCCAATTAATACTGATGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTAGGGGTTCCTGCTACGCAATGGATTTCAGTTTACAATGCTAGACTGCCAATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTATCCCAGCATGTTGATAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGTCTTCCTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTATCGCCTTTTTTCTTACACAAGGAATGGATCATGGAACAGTGGGATAAGAACTATTACATTACTTCTATTGCAGGGGCCAACAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACTCAACAATCATACAAAGTAAGTGACTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCAGGTCACATCAATGGCTACTGCTGGAAGTCGCTGGGGTATTGTTATGTCTCGCAATGCCGGATTTAGTAATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAGACGTTGGGATAATGGTTATAGGATTACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTGTATTAAGTATTCCGAGGCGCAGGCCTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGCACACATGTTAAGGAAAAATGGGCAAAAAACCTTTATCTTGCCTGTTTGTGTTATGGGCGCACCGTATGCTGA 2070 0.4507 MPELRSGVRRGRAAAVGQKDSEPAKRNVKTRAAVPAAEKGRPRTRLAAKKLEREKPPIPTPEPVSDKERAKNKKEGAGVMGDESGGLSANKGASPEEDANTPPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRERASGPGAMEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQTTGHRFESWNQPLANARMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATPQEKKLFLVDLGLATKWKDSSTGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPEILCCFCPAPFKQFLENVVNMKFDEEPNYSKLISLFDGVIGPNPALRPINTDGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLSQHVDRGIADGLLISCVSSCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWDKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFQVTSMATAGSRWGIVMSRNAGFSNQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALVLSIPRRRPGDETQETLRTSQFPSTHVKEKWAKNLYLACLCYGRTVC. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08471 689 ProSiteProfiles Protein kinase domain profile. 116 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08471 689 ProSitePatterns Protein kinases ATP-binding region signature. 122 149 IPR017441 GO:0005524
Seca7g08471 689 CDD STKc_CK1 116 402 - -
Seca7g08471 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Seca7g08471 689 MobiDBLite consensus disorder prediction 36 78 - -
Seca7g08471 689 MobiDBLite consensus disorder prediction 1 110 - -
Seca7g08471 689 SMART serkin_6 116 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08471 689 FunFam casein kinase 1-like protein HD16 89 445 - -
Seca7g08471 689 Pfam Protein kinase domain 116 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08471 689 SUPERFAMILY Protein kinase-like (PK-like) 116 412 IPR011009 -
Seca7g08471 689 Gene3D Transferase(Phosphotransferase) domain 1 89 446 - -
Seca7g08471 689 PANTHER CASEIN KINASE-RELATED 116 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08471 Seca-Chr7 189432963 189438487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08471 18 285 EF-hand Containing Proteins AT4G21940 21.071 1.14e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca7g08471 Pkinase 3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08471 - - gmx:100819969 1191.02