Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08470 ATGGCGTCCACATCTTGTGTCAGTAAGAGCCCATTACCCATGAAAGAGTCAGCTTCAAGCTCTAGTGCATATCCTCCTCCTGTAGCAAAATATGAAGAGGTTGTAGCCAATTCCAAGCTCTTCATGTTTACCTTGGAGAAACTCCACGCTGCTATGGGTACCAAGTTTATGATTCCCATTATTGGGGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGGAAAAATAATTAGAGAAAGAAAATGGAAAGACGTAACTTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTATTATGCTTCATTGCTCTTCCATTATGAACAGATCTACTTTTTTAAAGCCCGTGAATGGAACCCTAACACTTCTGATGCTTTGCAGAGTCAATCAGCCATGCAAGTTCCTGTTCCAAAGATGCAGATTTTGCAGCCATCACCAGAAATTCAACCAGCTGTCTCTCAACAGTCAAATGTTAATGCTACTAAATTGCCTGAAGGTTTTTGCTTTTTTCCAGCCCAAAATAAGATTAGTCATAAATCACAAAGAAAAAGGAAAAGAAAGTTGTCGTTACAGTCATGA 621 0.3977 MASTSCVSKSPLPMKESASSSSAYPPPVAKYEEVVANSKLFMFTLEKLHAAMGTKFMIPIIGGRELDLHRLFVEVTSRGGIGKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLFHYEQIYFFKAREWNPNTSDALQSQSAMQVPVPKMQILQPSPEIQPAVSQQSNVNATKLPEGFCFFPAQNKISHKSQRKRKRKLSLQS. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08470 206 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Seca7g08470 206 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g08470 206 FunFam High mobility group B protein 15 29 143 - -
Seca7g08470 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 173 - -
Seca7g08470 206 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Seca7g08470 206 SMART bright_3 36 127 IPR001606 GO:0003677
Seca7g08470 206 SMART ARID_2 32 122 - -
Seca7g08470 206 SUPERFAMILY ARID-like 33 131 IPR036431 GO:0003677
Seca7g08470 206 Gene3D - 28 144 IPR036431 GO:0003677
Seca7g08470 206 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Seca7g08470 206 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08470 Seca-Chr7 189408704 189412231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08470 1 163 ARID Transcription Factor Family AT1G04880 55.828 1.01e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca7g08470 ARID 5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08470 - - gmx:100783284 285.804