Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08450 ATGAAGAATGAGATTGGGCGGAAAGGAAAGAATCACCAACGTGGAAGTGGTGAGAAGAAGGATGGAAATTATGATGGTCGAATTCACAGCATTCGATATGAGAAGAATGGACCATACACATGCTCAGAGTGCTACCAACAGTTCCCTACCTCACAAAAATTTGCGGCTCATGTGAATGGTAGTCACTACAAGCATGAAACAAAAACTCAGAAAAGGAAGAGACTTTTGGCCAGAAACCAACGCAGAAATCATCTCCGCCTTCAAAAGGTAAATGGTGAGATCACTTTTGTTCCTGTTTCTAATTCTGAGCTCAAGGTTGGAGAAGAACGTGCTGCTACTGTTATGAGAGTCAAAGTTGAAGCTGGTGATGATGGCGATCATCAGGTTGCGCTTCCTGCAACAAAGGAAACTCTTGGAAAAGGCATCAAATTGGAGCGTGCTGATGATGCATAA 453 0.4305 MKNEIGRKGKNHQRGSGEKKDGNYDGRIHSIRYEKNGPYTCSECYQQFPTSQKFAAHVNGSHYKHETKTQKRKRLLARNQRRNHLRLQKVNGEITFVPVSNSELKVGEERAATVMRVKVEAGDDGDHQVALPATKETLGKGIKLERADDA. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08450 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 67 IPR013087 -
Seca7g08450 150 ProSitePatterns Zinc finger C2H2 type domain signature. 41 62 IPR013087 -
Seca7g08450 150 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08450 Seca-Chr7 189198355 189198807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08450 20 93 C2H2 Transcription Factor Family AT5G22990 54.054 2.90e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g08450 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08450 - - aprc:113873287 116.701