Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08445 ATGATTCATCAAAGTTCAGTTTATCAGGAAACTATTAACCAGAAGTCTCAAATTGAAAAGGACTTTTTGACAATCAGGCCTGTTCTTCAATCTTTCCATCAAAGTTTTGGAGATTTTACTTACAAGGACTTCATGCATGCATGTACACTAGTTGGTTCTCGAGCATGGGGAAGCACTAAGGGTTTGTCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGGGTTTCAGAAGCAATTGTAATGAGTGATGATCACAAACAATGCTCAGAAGTTAATGCTGATCGTGACTATGCTCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTGATGCTGGACTTTGGTTTTACAATTCCATATAACATTTATGATCAGGTTCAAATCCAGTTTGATATACCTAAGCATGATCCTCTGCATGCCTTGAAATTGGAACTCTTACAGCAGTACTTTGTGCCTCCAACCGATGATATGAAGGGCTTGAAGTATTCTGTGAATACCTTCACAATCAAGGAGGTGAGGTCTGCTAGAGGAAAAGGAAAGGGTCTTCCACAATCACTTCGTGCATTTGCTCGTGTTCTTTCTTGTACCACTCCTCAGGAACTTAATGATTTGGTCATAGAAGCTGCACAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAACAAAGAGATACAAGCACACCTGATGCTGTCATCACTATTCATCCAATTAATTGAGAAGCGCTACGCAACTATTATGTCATTGGATTCTTCCAATTCTCGCTCCTTTTGTGAAACAGTTGATGTTAGAAGACAAATGGCTCGAGATCTCATACATGGTGAGCTTCGCATTCTCAAATCGGCTACTGCCTGGCTGGAGAACTACTGTTTTTCCTTGACTTGA 909 0.4026 MIHQSSVYQETINQKSQIEKDFLTIRPVLQSFHQSFGDFTYKDFMHACTLVGSRAWGSTKGLSLIPFADFLNHDGVSEAIVMSDDHKQCSEVNADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHALKLELLQQYFVPPTDDMKGLKYSVNTFTIKEVRSARGKGKGLPQSLRAFARVLSCTTPQELNDLVIEAAQTDGRLARRPLQDINKEIQAHLMLSSLFIQLIEKRYATIMSLDSSNSRSFCETVDVRRQMARDLIHGELRILKSATAWLENYCFSLT. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08445 302 Gene3D - 125 297 IPR036464 -
Seca7g08445 302 FunFam Predicted protein 125 300 - -
Seca7g08445 302 Gene3D set domain protein methyltransferase, domain 1 1 122 - -
Seca7g08445 302 SUPERFAMILY SET domain 5 127 IPR046341 -
Seca7g08445 302 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 136 297 IPR036464 -
Seca7g08445 302 Pfam Rubisco LSMT substrate-binding 140 287 IPR015353 -
Seca7g08445 302 Pfam SET domain 11 109 IPR001214 GO:0005515
Seca7g08445 302 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08445 Seca-Chr7 189141969 189146896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca7g08445 Rubis-subs-bind 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08445 K19199 - gmx:100818002 481.485