Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08418 ATGGCGTCGTTGCTGCCATACGCTGATGTTGATTCCGATTTAAGGTCTTTGGCTGCTCGTGCTGAGGGTTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTCTTCTCTATTCCGTCACCACCCTTGCAGATGACGGTCCCGGGTCCCTTCGTGATGGATGTCGTAAAACGGAGCCGCTATGGATTGTTTTTGAAGTTTCAGGTACAATTCACCTTTCCTCATACCTCAGTGTCTCATCTTATAAGACAATTGATGGCAGAGGCCAGAGGATAAAATTGACTGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCACATCATTATTTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGTATCCAAATCAAACCAAATTCTAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTATGATGATGGCCTTATAGACATTACAAGACAGAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTGGGTGATAGATGCATCCGTGTGACCATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACAGCCTCGTCTAAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGCAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGGCCAAGTCTGGCTCCTTAGTATCTGAAGGAGATGTGTTTCTGAATGGTGCTGAGCCATGCTTATTAACAGAAAAGAGAGAAGAATCCATGTTCCATCCTAGTGAATATTACCCAACATGGACGATGGAAGCAGCTGCACATTCTCTCAGAGATGTCCTCCAGTTATGTGCAGGCTGGCAGTCCATTTGTAGGCCAGTAGACCATATGGTCCTTAATTAG 999 0.4474 MASLLPYADVDSDLRSLAARAEGFGRHAIGGLHGLLYSVTTLADDGPGSLRDGCRKTEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWAIYAVCASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEEAKSGSLVSEGDVFLNGAEPCLLTEKREESMFHPSEYYPTWTMEAAAHSLRDVLQLCAGWQSICRPVDHMVLN. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08418 332 Gene3D - 7 318 IPR012334 -
Seca7g08418 332 SMART amb_all 32 245 IPR002022 -
Seca7g08418 332 Pfam Pectate lyase 76 238 IPR002022 -
Seca7g08418 332 SUPERFAMILY Pectin lyase-like 20 328 IPR011050 -
Seca7g08418 332 PANTHER PECTATE LYASE 18-RELATED 9 286 IPR045032 GO:0030570
Seca7g08418 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Seca7g08418 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Seca7g08418 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08418 Seca-Chr7 188942387 188944684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08418 42 330 Polysaccharide Lyase AT3G55140 82.007 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08418 K01728 - gmx:100802068 623.239