Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08393 ATGAAGAGAGAAAGAGAAGTTGATAGCGTAACCATGGCCAACTACTTGATGTTGCTTTCTCGTGGTGGTGGTGTCTACCCTTCCGCGGCTTTCAATAACAACAACCGTGTGTTTGAGTGCAAGACATGTAACCGTCAGTTTTCGTCGTTTCAAGCACTGGGAGGGCACCGTGCCAGTCACAAGAAGCCGAGATTGATGGCAGAAACAGGGGATGGGCATCAACAACAACAACCACCAAAGCCTAAAACGCATGAGTGCTCTATTTGTGGATTGGAGTTTGCGATAGGACAAGCTTTGGGTGGTCACATGAGGCGACACAGAACAGCAGCAGCAGCTAATTCTAATTCCAATGGAAACGTGCAGATGCTGCAGAATTCTGTAACTACCACTAGCACTAAGAACAGAGAGAACGGCAACAACAGAGTTTTGTTTCTGGATTTGAATCTGACACCTTTTGAGAATGATTTGGAATTTTTGAAGATTGGTCAACGCACTCCTTTGGTGGGTTGTTTCAATTGA 519 0.4547 MKREREVDSVTMANYLMLLSRGGGVYPSAAFNNNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMAETGDGHQQQQPPKPKTHECSICGLEFAIGQALGGHMRRHRTAAAANSNSNGNVQMLQNSVTTTSTKNRENGNNRVLFLDLNLTPFENDLEFLKIGQRTPLVGCFN. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08393 172 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Seca7g08393 172 Gene3D Classic Zinc Finger 33 58 - -
Seca7g08393 172 Pfam C2H2-type zinc finger 84 108 - -
Seca7g08393 172 Pfam C2H2-type zinc finger 37 63 - -
Seca7g08393 172 SUPERFAMILY beta-beta-alpha zinc fingers 36 106 IPR036236 -
Seca7g08393 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Seca7g08393 172 SMART c2h2final6 38 60 IPR013087 -
Seca7g08393 172 SMART c2h2final6 84 106 IPR013087 -
Seca7g08393 172 PANTHER ZINC FINGER PROTEIN ZAT5 6 155 - -
Seca7g08393 172 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Seca7g08393 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Seca7g08393 172 Gene3D Classic Zinc Finger 65 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08393 Seca-Chr7 188709796 188710347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08393 1 159 C2H2 Transcription Factor Family AT2G37430 42.353 2.25e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g08393 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08393 - - gmx:100500371 201.83