Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08386 ATGGTGAACGTGATGGAATGGCAGAAACAGCTACAGAGGTGGCAGCAGAATGGGAATGGGAATGTTGATGTCAATGGAGAAATGATGTATGTGAAAGTGATGACTGATGAGCAGTTGGAAACTCTGAGGAAACAAATTGCAGTTTATGCCACCATTTGTGAGCAACTCATTGAAATGCACAGAACACTCTCAGCTCAACAGGATCTTGCTGCAGGGGTTAGGCTGGGAAATATATACTGTGACCCATTGATGACATCTACTGGCCACAAAATAACATCCAGACAGAGGTGGACTCCTACACCTGTGCAGCTTCAGATTCTTGAGCGTATATTTGATGAGGGGAATGGAACTCCAAACAAGGAAAAAATCAAAGAGATTACTACTGAACTGGGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAATTGGTTCCAAAATAGGCGTGCTAGATCAAAAAGAAAACTGCAAAATGTAGCACCTAGTAACACTGAATCAGAAGTAGAGACTGAGGTTGATTCTAAGGATAAGAAATCAAAACCAGAGGAATTTCAGTCCCAACAAAATGTAACTACTACAGGTGCTGAAAAGTTGTGCTTCCAAAACCCTCAAGCTCAAGCATGCTCCCAATTGCAATACTTGAATCCAGATTCTAATAGACCATATTCCATGCTCCCATCAAGAAATTTGAATCGTGTGTCTCCTTTTGATGAGGTGCTATCAAACTCAAGGAGTGACTATCTAGCAGGAAAAATGGAAGTAGATGGAAGTTACAATTTATACCAGCAAGCAGGAGACTACAATTTGGCGGGCTGA 816 0.4142 MVNVMEWQKQLQRWQQNGNGNVDVNGEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHRTLSAQQDLAAGVRLGNIYCDPLMTSTGHKITSRQRWTPTPVQLQILERIFDEGNGTPNKEKIKEITTELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVETEVDSKDKKSKPEEFQSQQNVTTTGAEKLCFQNPQAQACSQLQYLNPDSNRPYSMLPSRNLNRVSPFDEVLSNSRSDYLAGKMEVDGSYNLYQQAGDYNLAG. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08386 271 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Seca7g08386 271 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Seca7g08386 271 Gene3D - 96 160 - -
Seca7g08386 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 268 IPR044559 GO:0003700
Seca7g08386 271 SMART HOX_1 92 159 IPR001356 GO:0003677
Seca7g08386 271 MobiDBLite consensus disorder prediction 168 183 - -
Seca7g08386 271 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Seca7g08386 271 MobiDBLite consensus disorder prediction 153 189 - -
Seca7g08386 271 CDD homeodomain 94 155 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08386 Seca-Chr7 188651954 188654397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08386 4 271 Wox Gene Family AT4G35550 51.020 5.07e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca7g08386 Homeodomain 2.1e-18 CL0123