Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08376 ATGGATTTGGACCAGTGGATCTCTAAGGTTAAAGATGGCCAGCATCTTCTCGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATTGAGGAATCCAATGTGCAGCCTGTCAATAGTCCAGTAACTGTTTGCGGTGATATTCATGGTCAATTCCATGATCTCATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTCACCATCCTTTTATTGCTAAAAGCTAGATACCCAGCCAATATTACCCTTTTACGTGGAAATCATGAAAGTAGACAACTAACCCAGGTTTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCTTGGCGGTATTGTACAGATGTTTTCGACTATCTAACACTTTCTGCCATTATAGATGGAACGGTGCTTTGTGTTCATGGTGGCCTTTCTCCCGACATACGAACAATTGATCAGATAACTACAAGAATGTTTTTGTTATTCATTAGAAAGAGAATAATTAAGTATCTTGGTCAAAAGGTGGTGATAAATTATTTATTGCAGATAAGGGTCATTGAACGGAACTGTGAAATTCCTCATGAGGGTCCTTTTTGTGATCTAATGTGGAGCGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCTCGTGGAGCAGGTTGGCTTTTTGGATCTAGGGTCACTTCCGAGTTCAATCACATAAATAATCTTGATCTTGTTTGTCGAGCGCACCAACTTGTTCAAGAAGGCCTGAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAGAATATGGAAAGGGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACTGGCGTTCCATATTTCTTATAA 999 0.3954 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQITTRMFLLFIRKRIIKYLGQKVVINYLLQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08376 332 Pfam Calcineurin-like phosphoesterase 44 264 IPR004843 GO:0016787
Seca7g08376 332 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 255 275 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 199 226 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Seca7g08376 332 PRINTS Serine/threonine phosphatase family signature 278 294 IPR006186 GO:0016787
Seca7g08376 332 SMART pp2a_7 16 316 IPR006186 GO:0016787
Seca7g08376 332 CDD MPP_PP2A_PP4_PP6 2 314 - -
Seca7g08376 332 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 332 IPR047129 GO:0004722
Seca7g08376 332 SUPERFAMILY Metallo-dependent phosphatases 2 315 IPR029052 -
Seca7g08376 332 Gene3D - 1 332 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08376 Seca-Chr7 188563926 188571797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08376 43 250 Calmodulin-binding Proteins AT5G63870 39.819 2.79e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08376 K15498 - pvy:116128297 622.468