Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08372 ATGGCATCGCAGGGGAGGAAGAGAGTTGATGCCGTCGATTCCCGTTCTGCTTCAGTTCTTGTTCGCGCCAAAGATGGCAGTGCTTTTGCTCGATGCGAAGAGTGCAACAAGGATGTGCCGGTGGCTCTAATCAGCATGCACAGTTGCAGCCTCGAAGCTAAAATTAAGATGAATCTCGATGCTCAGGTTGTTGAACAAACTACTGAAGTCAAGAAGCCAGAGAGGAAGAAGCCCAAATCTAAAGAACCAAAGGCAAAAAGGTCCAAGGTTGAGAAGGGGAAGAAGAAGGTCAAGGATCCTAACATGCCCAAGCGTCCTCCAACTGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAAACTTTCAAGGAAGCAAATCCTGATTCAAAAGATGTTAAAAGGGTTGGCAAAGAGGCTGGTGAGAAGTGGAAGGCCATGACTGAGGAAGAGAAGAAGCCTTACTTGGATAAAGTTGCTGAACTGAAGGCAGAATATGAGAAGGCTATGGCAACCTATAACGCTGCTGAAGATGAAGTATAG 537 0.4581 MASQGRKRVDAVDSRSASVLVRAKDGSAFARCEECNKDVPVALISMHSCSLEAKIKMNLDAQVVEQTTEVKKPERKKPKSKEPKAKRSKVEKGKKKVKDPNMPKRPPTAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKAMTEEEKKPYLDKVAELKAEYEKAMATYNAAEDEV. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08372 178 Gene3D High mobility group box domain 98 174 IPR036910 -
Seca7g08372 178 MobiDBLite consensus disorder prediction 77 93 - -
Seca7g08372 178 MobiDBLite consensus disorder prediction 66 104 - -
Seca7g08372 178 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Seca7g08372 178 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 172 - -
Seca7g08372 178 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Seca7g08372 178 CDD HMG-box_AtHMGB1-like 104 164 - -
Seca7g08372 178 SMART hmgende2 102 173 IPR009071 -
Seca7g08372 178 Coils Coil 157 177 - -
Seca7g08372 178 SUPERFAMILY HMG-box 94 173 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08372 Seca-Chr7 188530579 188532479 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca7g08372 HMG_box 3.5e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08372 K25507 - gmx:100306558 273.092