Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g08359 | ATGTCGGAAGCACCGTCTCAGCCACCGGTCCCACCCACGGAAGCGTCGCCGTACTGGTGCTACCACTGCGAGAAACGCGTCTCCATCGAAACGCTCGCAAATCTCCCTGACGTCATCTGCGGCGAGTGCAAGAACGGCTTCGTTGAATCCATCCCCACTCCCTCTCGCTCTCGCTCCCCTTCCTCCTCCTCCGATGACCCCTACTTCGGCTCTCACTTCCTCCAAGTCCTTCGCCTAATCGCTCAATCGGCGCGTGACGACGACGACGCCTCTCCTCCCCCGCCTCCGAACCGTTCACCGGAGAACGATTTCCTCAGGATCGAGCTCGGAGGCTGGGGTGATGACGACAACGATGACGACGACGACGGCGTCGAGTTTCACAACGACAGCGAGGAACACGAAGTTGCCGTCGAGGATCAGGAAGATCGATCCGTCAACGAGGATCCGCACGGAGATGACGAAGATCTAAGGCGAAGGAGGCGCGAACTGCTGCGGCTTCGGATTAGGGATTTGGCGACACGAACCCGTAGCATGCGGAACCGGATCTTGGATTGGGCTGAGATTCTGATGGGACTGGAAGACAATTCCATAGAGTTCCGGCTTCAGGTGCCGGAATCAGACCGGTACGTCGGGAATCCGGAGGATTATGTGGACGCGGCGGAGTATGAGGCGTTGCTGCAGACGCTGGCAGAGAGCGACGGAAACGGGAGGAGGGGAGCCCCGCCGGCATCGAAGTCTGCGGTGGAAGCGTTGCCGACGGTGAAGATTGTGTCGGAGAGTGAAGCTGTAGCGTGCGCTATATGTAAGGACTTGGTTGGTGTTGGAGAGTTAGCGAAGAGATTGCCGTGTGGGCATGAGTACCATGGAGATTGCATTGTTCCATGGTTGAGTACCAGAAATTCTTGCCCTGTGTGCAGGTTTGAGCTTCCTACGGATGATAAAGAATATGAGGAAGAAAGAGTGGTCAACACTTCTTCTAATGGAGCTTCAGGTTCGGGTTCGGGTCGGGGTGGAGCTGCCACCATTTGA | 1029 | 0.5714 | MSEAPSQPPVPPTEASPYWCYHCEKRVSIETLANLPDVICGECKNGFVESIPTPSRSRSPSSSSDDPYFGSHFLQVLRLIAQSARDDDDASPPPPPNRSPENDFLRIELGGWGDDDNDDDDDGVEFHNDSEEHEVAVEDQEDRSVNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQVPESDRYVGNPEDYVDAAEYEALLQTLAESDGNGRRGAPPASKSAVEALPTVKIVSESEAVACAICKDLVGVGELAKRLPCGHEYHGDCIVPWLSTRNSCPVCRFELPTDDKEYEEERVVNTSSNGASGSGSGRGGAATI. | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g08359 | 342 | MobiDBLite | consensus disorder prediction | 113 | 127 | - | - | |
Seca7g08359 | 342 | MobiDBLite | consensus disorder prediction | 322 | 342 | - | - | |
Seca7g08359 | 342 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 131 | 310 | - | - | |
Seca7g08359 | 342 | MobiDBLite | consensus disorder prediction | 84 | 155 | - | - | |
Seca7g08359 | 342 | FunFam | E3 ubiquitin-protein ligase RING1-like | 228 | 312 | - | - | |
Seca7g08359 | 342 | SUPERFAMILY | RING/U-box | 260 | 312 | - | - | |
Seca7g08359 | 342 | MobiDBLite | consensus disorder prediction | 321 | 342 | - | - | |
Seca7g08359 | 342 | MobiDBLite | consensus disorder prediction | 128 | 155 | - | - | |
Seca7g08359 | 342 | SMART | ring_2 | 265 | 305 | IPR001841 | - | |
Seca7g08359 | 342 | Pfam | zinc-ribbon | 17 | 51 | IPR039525 | GO:0061630 | |
Seca7g08359 | 342 | CDD | RING-H2_PA-TM-RING | 265 | 306 | - | - | |
Seca7g08359 | 342 | Pfam | Ring finger domain | 265 | 306 | IPR001841 | - | |
Seca7g08359 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 265 | 306 | IPR001841 | - | |
Seca7g08359 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 312 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g08359 | Seca-Chr7 | 188365910 | 188368848 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g08359 | 176 | 318 | C3H Transcription Factor Family | AT5G01980 | 50.000 | 6.69e-36 | 134 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g08359 | - | - | gmx:100802200 | 500.36 |