Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08353 ATGTCTCAGACATCCAGTGTCCCGCCTGTGTTCCAGTCTATCAAATCATTGCCTCCTGAGTTCAAGTTTACTAATAATCCAAACCCTGGTCTTGTGGCAAAACATGGAAATATTAAACTGAGAAGCACTGATCTGATTGGATCAAACGGTCTTGAAAATGGTGCACTAGGAGGGTTGGTTTCTAAGGAAGTTCACAGCCGTGGTGGTGACATGGATCTTTTTGATGAGGAATCGCCATATGGCGGAAAACGCAGATCATTTGATGACAGGCCAACAAATGCTGATGAAGACTCGGTTTCTGATTCGTTGCCCCTCCCATCAATTTCAACATCCTCTAGGGAAAGCAGATGGAGTGATACAACTCCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGCTTCAACTTTCTAATGGGGACTGGGAGCTGGTGAAGATAATATCCACTTCTGGAACAGAGTCTATCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGATGAAAATTTGGTGCCGGCAAATCCCGATATTCTTGATGGAGTGGATGATCTCATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCAATATAGATACAATCAAAATATGATCTATACAAAAGCAGGGCCTGTTTTGGTTGCCGTAAATCCCTTTAAGAAAGTTCCTCTTTATAGTAATGACTATATTGAAGCCTACAAACGTAAAGCAATTGAAAGCCCTCATGTATATGCAATTACAGACACAGCCATCAGAGAAATGATACGGGATGAAGTTAATCAATCAATAATTATAAGCGGTGAGAGTGGAGCAGGGAAGACCGAGACAGCAAAAATAGCAATGCAGTACTTGGCCGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTTGAAGCCTTTGGTAATGGCAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGCGAAACTGGAAAAATATCTGGTGCAAATATTCAAACATGTAAGTTTACTACTGAATTACAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCACCATCTCTCAGGGAGAAGCTAAATCTACAAAGTGCGGAAGACTATAAATATTTGAGGCAGAGCAATTGTTATTCAGTTAGCGGTGTTGATGATGCAGAAGAATTTCGTGTAGTCATGGAAGCTCTGGATGTTGTCCACATTAGCAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATCGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAGGGGCTGTTCAGCGCTGCCAAGTTGATTGGTTGTGACATAGAAGATCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATATCATTGTGCAGAAGTTGACACTGTCTCAGGCTATTGATGCGAGAGATGCTTTGGCGAAGTCAATATATGCATGTCTGTTTGATTGGCTGGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGACGCACTGGCAGATCTATCAGTATTCTGGATATTTATGGCTTTGAGTCGTTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTACAGCAACACTTTAACCGTCATTTATTCAAGTTAGAACAAGAGGAGTATATCCAAGACGGCATTGATTGGACTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTGCTATCTCTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATTTAACATTTGCTAACAAGCTTAAGCAGCATTTGAATTCTAATTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTTACTGTGTGTCATTATGCAGGGGAGGTCACTTATGATACAACTGGATTCCTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCTTCAAGCAAATGTCATCTTCCTCAGATATTTGCATCCCATATGCTTACTCAGTCTGAGAAGCATGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTAGCCACAAAATTCAAGGGACAATTGTTTCAACTGATGCAACGTTTAGAAAATACCACACCACATTTTATTCGCTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATACGAGCAAGGCCTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGAATATCAAGATCGGGCTTTCCAACTAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTCGCATCCCAGGATCCACTTAGTGTTTCAGTTGCAATTCTTCATCAGTTTAATATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTCTTCCGAACAGGGCAGATTGGGGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTGCAAAGTTGCTTCAGGGGTTACCAAGCTCGTCGTCATCGCAGGGAGCTCTGGAGAGGAATCACTACTCTTCAGTCATATATTAGAGGTGAGAAAAACAGAAAGGAATATGCAGCTGTGCTTCAGAGACATAGAGCTGCTGTTATTATACAGAAGTGGATGAAAACAGTATTTGCAAGAAACAGATTGAAGAATATCAATGACGCTGCAGTTGTTATACAATCATTTATTCGCGGTTGGTTAGTCAGAAGATGCTCAGGAGATATAGGATTGTTAAAATCCGGAGGCATGAAGACTAATGAGTCAGATGAGGTTCTGGTGAAGTCGTCTTTCCTAGCTGAATTACAGCGCAGGGTACTTAAGGCTGAAGCTGCCCTGAGAGAGAAAGAAGAGGAAAATGACATCCTTCACCAACGTCTTCAACAGTATGAGAGCAGATGGTCTGAATATGAATTAAAGATGAAATCTATGGAAGAAGTATGGCAAAAACAAATGAGATCTCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATGGATGATTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGATGAGAGGGATTACAGCTGGGATGTAGGAAGTAATCACAGGCGCCAAGAAAGCAATGGAACAAGATCTATGAGTGCTGGTTTGAGTGTTATAAGTAGGTTGGCTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAAGTTGAAGCAAGTTTGGACCCAGACCGAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGCGCAAGACTGCGTGAAACAAAGGTTATTTTACATAAACTTGGAAGTGATGGTTCAATTGAGAAAGCGAAGAAAAAGTGGTGGGGAAGAAGAAATAGTACAAGGATAAATTGA 3537 0.4049 MSQTSSVPPVFQSIKSLPPEFKFTNNPNPGLVAKHGNIKLRSTDLIGSNGLENGALGGLVSKEVHSRGGDMDLFDEESPYGGKRRSFDDRPTNADEDSVSDSLPLPSISTSSRESRWSDTTPYASKKKLQSWLQLSNGDWELVKIISTSGTESIISLPDGKVLKVKDENLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAVNPFKKVPLYSNDYIEAYKRKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFTTELQSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSAEDYKYLRQSNCYSVSGVDDAEEFRVVMEALDVVHISKEDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFSAAKLIGCDIEDLKLTLSTRKMKVGNDIIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSSKCHLPQIFASHMLTQSEKHVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLENTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARRHRRELWRGITTLQSYIRGEKNRKEYAAVLQRHRAAVIIQKWMKTVFARNRLKNINDAAVVIQSFIRGWLVRRCSGDIGLLKSGGMKTNESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDERDYSWDVGSNHRRQESNGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGARLRETKVILHKLGSDGSIEKAKKKWWGRRNSTRIN. 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08353 1178 Gene3D Kinesin motor domain 182 783 IPR036961 -
Seca7g08353 1178 SMART MYSc_2a 173 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 ProSiteProfiles IQ motif profile. 858 885 IPR000048 GO:0005515
Seca7g08353 1178 ProSiteProfiles IQ motif profile. 881 908 IPR000048 GO:0005515
Seca7g08353 1178 Gene3D - 906 948 - -
Seca7g08353 1178 Gene3D - 858 905 - -
Seca7g08353 1178 MobiDBLite consensus disorder prediction 68 96 - -
Seca7g08353 1178 MobiDBLite consensus disorder prediction 97 120 - -
Seca7g08353 1178 Pfam IQ calmodulin-binding motif 930 946 IPR000048 GO:0005515
Seca7g08353 1178 Pfam IQ calmodulin-binding motif 882 899 IPR000048 GO:0005515
Seca7g08353 1178 Pfam IQ calmodulin-binding motif 860 875 IPR000048 GO:0005515
Seca7g08353 1178 Pfam IQ calmodulin-binding motif 906 926 IPR000048 GO:0005515
Seca7g08353 1178 MobiDBLite consensus disorder prediction 1041 1080 - -
Seca7g08353 1178 CDD MYSc_Myo8 193 842 IPR036022 -
Seca7g08353 1178 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 MobiDBLite consensus disorder prediction 68 120 - -
Seca7g08353 1178 Gene3D - 550 744 - -
Seca7g08353 1178 PANTHER MYOSIN 172 1169 - -
Seca7g08353 1178 PRINTS Myosin heavy chain signature 540 568 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 PRINTS Myosin heavy chain signature 593 621 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 900 IPR027417 -
Seca7g08353 1178 FunFam Myosin heavy chain 364 420 - -
Seca7g08353 1178 Gene3D Myosin VI head, motor domain, U50 subdomain 425 722 - -
Seca7g08353 1178 SMART iq_5 927 949 IPR000048 GO:0005515
Seca7g08353 1178 SMART iq_5 855 877 IPR000048 GO:0005515
Seca7g08353 1178 SMART iq_5 904 926 IPR000048 GO:0005515
Seca7g08353 1178 SMART iq_5 878 900 IPR000048 GO:0005515
Seca7g08353 1178 Gene3D - 787 855 - -
Seca7g08353 1178 FunFam Unconventional myosin-XIX 552 744 - -
Seca7g08353 1178 Pfam Myosin head (motor domain) 181 842 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 MobiDBLite consensus disorder prediction 1041 1055 - -
Seca7g08353 1178 ProSiteProfiles Myosin motor domain profile. 179 854 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca7g08353 1178 Coils Coil 974 1022 - -
Seca7g08353 1178 ProSiteProfiles IQ motif profile. 928 957 IPR000048 GO:0005515
Seca7g08353 1178 Gene3D - 364 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08353 Seca-Chr7 188320991 188336121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08353 7 1176 Myosins gene family AT1G50360 76.065 0.0 1799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08353 - - gmx:100801124 2097.78