Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08348 ATGTCGGCCTCCGATGGAACCACCAACGGGTCAATGATTGACCCACAGCGCAACCAGCAATTAGCCGTCAAGAAACCCCCCTCAAAGGACCGTCACAGCAAGGTCGACGGCCGTGGACGCCGTATACGGATGCCAATCATTTGCGCCGCACGTGTCTTCCAGCTCACGCGTGAGTTAGGCCATAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAACCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCCGCCAGCTTCTCCTCCGTCTCCGTCTCTGTTCGCGCTTCCAACTCCCTTCCTTCCCCTTCCTCCACTTCCTCTCTCGACCACAAGCCCTTGCTCGCTTCTCCCACCCCTTTCATTCTCGGCAAGCGTATTCGCACCGATGATGATTCCTCTGCCGCCAAGGACGACGCCGTTTCCGTGGGACACTCCTTGGTGGGCCCTGCTACCCCCGCTGGATTGTGGGCCCTTCCCGCTAGGCCCGATTTCGGACAAATTTGGAGCTTCGCGGCGGCTGCTGCTGCTGCGGCTCCTCCGCCGGAAATGGTGGTGCAGCCTGCGGCCGTGTCGGTGTCTCAGCAGCAGCAGCAGCAGGCTTCGTTGTTCGTTCATCATCATCATCAACAGCAACAAGCCATGGGAGAAGCTTCGGCGGCGAGGGTGGGGAATTACCTTCCGGGGCATCTGAATTTGCTGGCATCGTTGTCCGGTGGACCTGGAAATTCTGGTCGGAGAGACGATGAGCCTCGTTGA 774 0.6008 MSASDGTTNGSMIDPQRNQQLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRASNSLPSPSSTSSLDHKPLLASPTPFILGKRIRTDDDSSAAKDDAVSVGHSLVGPATPAGLWALPARPDFGQIWSFAAAAAAAAPPPEMVVQPAAVSVSQQQQQQASLFVHHHHQQQQAMGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08348 257 ProSiteProfiles TCP domain profile. 28 82 IPR017887 -
Seca7g08348 257 MobiDBLite consensus disorder prediction 1 23 - -
Seca7g08348 257 MobiDBLite consensus disorder prediction 24 40 - -
Seca7g08348 257 Pfam TCP family transcription factor 28 142 IPR017887 -
Seca7g08348 257 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 231 IPR005333 GO:0003700
Seca7g08348 257 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08348 Seca-Chr7 188290460 188291233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08348 7 257 TCP Transcription Factor Family AT5G23280 64.822 2.71e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca7g08348 TCP 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08348 K16221 - gmx:100799005 350.132