Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08341 ATGTCTTCCGGCAACAGCGGCGGTGGCGGGGTTAAGCCGTACTTCTGCCACGTGTGCGACCGGAGAGTAACCTGCGCCGATGATGATTCCGAACCTTTCTGCCCGATCTGCCTCCAAGGTTTTGTCGAAGAATGCAATCCTAATCCCAGTCCCAACAGTAACCCTAACCCTAACGTCGCATTCCGTTTCAACTCGAACCCTTCTTCCGATTCTGATTCCGATTTCCCCTTCCATCCCTTCTCCCTTCTCCCTTTATTATTATCCTCCGTTTCAACCACCGCCGTCGACCTCCAGAACCCTCGCCACTTCTCCGATTCTCCCGAATTCAGTACCCGCCCCGAATCGGACATGTTCGACCCGTTCCTCTTCCTCCAGAACCACCTCCAAGGTCTTCGCGCCGATGGGGCTAACATCCAATTCGAGATCAATCACCCTTCTGAACCGGGGTTTCGCCTCCCCACCAACATCGGCGATTACTTCCTCGGCCCTGGCCTCGAGCAATTGATTCAGCAGCTCGCCGAGAACGACCCCAACCGTTATGGGACGCCGCCGGCATCGAAAGATGCCATTCAGAATCTTCCCAACGTAACTGTCGACGACGAGTTGTTGAACTCGGAGTTGAACCAGTGCGCGGTTTGTCAGGACGAGTTCGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGCAAGCACGTGTACCATGACGATTGCTTGCTTCCCTGGCTTCAATTGCATAACTCTTGCCCTGTGTGCCGATATGAATTGCCTACCGACGATGCCGATTATGAGAATCGGATCAGTGGGGATAGTGGTGAGGGGTCGAGGTCTGTTGATAATGGTAGCAGTGGCGGCGGTGGAGGGGGAGGGGGAAATAGACCCGTTCACAGGACTTTTAGAATATCATTGCGGTACCCATTTGGTGCAGGTGAATCTGCTCAGGAAAGCGGTGAAAGAGGATTGGGAAATAGGGAAGAAGATTTGGATTGA 984 0.5356 MSSGNSGGGGVKPYFCHVCDRRVTCADDDSEPFCPICLQGFVEECNPNPSPNSNPNPNVAFRFNSNPSSDSDSDFPFHPFSLLPLLLSSVSTTAVDLQNPRHFSDSPEFSTRPESDMFDPFLFLQNHLQGLRADGANIQFEINHPSEPGFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAIQNLPNVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDADYENRISGDSGEGSRSVDNGSSGGGGGGGGNRPVHRTFRISLRYPFGAGESAQESGERGLGNREEDLD. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08341 327 Pfam Ring finger domain 208 251 IPR001841 -
Seca7g08341 327 MobiDBLite consensus disorder prediction 261 327 - -
Seca7g08341 327 SUPERFAMILY RING/U-box 189 257 - -
Seca7g08341 327 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Seca7g08341 327 FunFam E3 ubiquitin-protein ligase RING1-like 171 257 - -
Seca7g08341 327 Pfam zinc-ribbon 13 44 IPR039525 GO:0061630
Seca7g08341 327 SMART ring_2 210 250 IPR001841 -
Seca7g08341 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 257 IPR013083 -
Seca7g08341 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08341 Seca-Chr7 188242098 188245363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08341 154 276 C3H Transcription Factor Family AT5G01980 46.341 1.48e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08341 K11982 - gmx:100785289 386.726