Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08313 ATGGGTGTGGCTCAGAACATTCAAGATATGGAGGAGGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCCGGAGTTGCTGGACCATTGGTCATTCTTGACAAGGTTAAGGGACCCAAATACCAAGAGATTGTTAACATTCGTTTAGGAGATGGAACTACTCGACGTGGACAAGTTTTAGAGGTTGATGGTGAAAAGGCAGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTCGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAAGCGTACTTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGCGAACTTATCCTGAGGAGATGATACAGACCGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTTTATTCTCGGCTGCTGGTCTTCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAGGCTGGCCTGGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGGTGGAGAAGAGGACAACTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTACGAATGTGGCAAGCATGTTCTTGTGATTCTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATCTATGAACGTGCTGGAAGAATTGAGGGGCGTACAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGACCTCACAGGATATATCACTGAGGGGCAGATATACATTGACAGGCAGCTGCATAATAGACAGGTGGGTTATGTTGGAGCTTTCGGCTGTAATGAATACTTTACACCATGTAGGATCAGAATGCATCCTAACATATACCCACCGATCAACGTCCTTCCTTCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATGCTGATGTGTCGAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTCTCGTCTGAGGATCTGCTGTATTTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTCACCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTGGATCTTGCATGGACTTTACTTCGGATTTTCCCCCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTATTATAGCCGAGATGCTGGTAATTGA 1536 0.4336 MGVAQNIQDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQVGYVGAFGCNEYFTPCRIRMHPNIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08313 511 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Seca7g08313 511 ProSitePatterns ATP synthase alpha and beta subunits signature. 391 400 IPR020003 GO:0005524
Seca7g08313 511 PIRSF V-ATPsynth_beta/V-ATPase_B 11 369 IPR022879 -
Seca7g08313 511 PIRSF V-ATPsynth_beta/V-ATPase_B 381 511 IPR022879 -
Seca7g08313 511 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Seca7g08313 511 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 366 IPR022879 -
Seca7g08313 511 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 365 IPR000194 GO:0005524
Seca7g08313 511 Hamap V-type ATP synthase beta chain [atpB]. 18 509 IPR022879 -
Seca7g08313 511 CDD V_A-ATPase_B 92 408 - -
Seca7g08313 511 Gene3D - 384 510 - -
Seca7g08313 511 Gene3D - 29 367 - -
Seca7g08313 511 CDD ATP-synt_V_A-type_beta_C 410 504 - -
Seca7g08313 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08313 Seca-Chr7 187947794 187954356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08313 1 511 Primary Pumps ATPases(2) AT4G38510 92.172 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08313 K02147 - gmx:100793764 936.406