Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08304 ATGGACCGCAATTCAAGACGTTCTAAGGGTGTAGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAGTGGATCCACTGGACTTGTAGGTCCTTATTCTGGGGGTGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTGGTCCAGCTGCCTCTTGATGAAAGCGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCCCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGTAGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCAAGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGTACTGCATCAAGCATGGTTGGTTCCATTGGTAATTCTGTTGCCAACAACACAGGCCTTAATCTACCAGCAACAGGAAACATACAAGCAGATGCTCTTGTTGGAGTTGTGCCAGTGGGTTCTTCACTGGTTTCCCCTCTTTCTTCTGTTCCTGCAGTAGCTGGATTGCCAGGTGGAGGTCTCCAAGTTCCCACAGCCACAACTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGAAAGATGAGATGGAACCGGATTTCGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAATTTGGGAAGTTAAAACACATATATGTTGATAAAAAGAGTGCTGGTTTTGTGTACTTACGATTTGAAGATATTCAATCTGCAATAAGTGCACAGCGGTCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGACAGATTCCCAGACAGTAGATAA 1086 0.4401 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGSTGLVGPYSGGARRLYVGNLHFNITEADLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGSRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLDRSGTASSMVGSIGNSVANNTGLNLPATGNIQADALVGVVPVGSSLVSPLSSVPAVAGLPGGGLQVPTATTPSIDTIGVPSECLLLKNMFDPKDEMEPDFDLDIKEDVEAECSKFGKLKHIYVDKKSAGFVYLRFEDIQSAISAQRSLHGRWFAGKMITASFMVPQSYEDRFPDSR. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08304 361 Gene3D - 68 175 IPR012677 -
Seca7g08304 361 SUPERFAMILY RNA-binding domain, RBD 69 164 IPR035979 GO:0003676
Seca7g08304 361 SUPERFAMILY RNA-binding domain, RBD 263 347 IPR035979 GO:0003676
Seca7g08304 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Seca7g08304 361 FunFam CC1-like, splicing factor 67 175 - -
Seca7g08304 361 SUPERFAMILY RNA-binding domain, RBD 1 63 IPR035979 GO:0003676
Seca7g08304 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 350 IPR000504 GO:0003723
Seca7g08304 361 SMART rrm1_1 268 346 IPR000504 GO:0003723
Seca7g08304 361 SMART rrm1_1 73 145 IPR000504 GO:0003723
Seca7g08304 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Seca7g08304 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 343 IPR000504 GO:0003723
Seca7g08304 361 Gene3D - 1 54 IPR012677 -
Seca7g08304 361 Gene3D - 262 361 IPR012677 -
Seca7g08304 361 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 163 285 IPR029123 -
Seca7g08304 361 FunFam Splicing factor, CC1-like protein 262 361 - -
Seca7g08304 361 NCBIfam splicing factor, CC1-like family 1 359 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca7g08304 361 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 360 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca7g08304 361 CDD RRM3_RBM39_like 266 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08304 Seca-Chr7 187875230 187880886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08304 7 145 Eukaryotic Initiation Factors Gene Family AT4G34110 30.137 5.39e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08304 K13091 - gmx:100789839 617.846