Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08298 ATGAACATCATCATGCAAAATTTAACTGAGAGACTGAGACCCCTTGTTGGTTTGAATGGTTGGGACTACTGTGTCAACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAACAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCAATGGCTCCATGCAGAGATACCATGTTTCCACACCCCAGAATAAAGGCCTGTGATCTTCTTTCCCAACTTAACACTTCAATCCCCATAGATTCTGGGATTCATGCTCAGACCCTATTGACAAACCAACCCAATTGGTTCAACTATTCCAATAGCTTGGATCCGAACACTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTCCGGTGCCAGGTGGACTAATTGAGCTATTTGTAACTAAACAGGTGCCAGAAGATCATCAGGTAATAGATTTTGTCACAACCCAGTGCATTGCCTTGATGGAGCAAGAAGCAGTGAACCACTCAACAAGCTTCAACATTGATGTAAATTCAATGAGCAACATGCAATCAAATCCACTTCTAGGTGATGAAAATGAAGGAAATAACAAGAACAATCATTTCCAGCCATCAGAGACTTCAAGTCTCCCACATGACATCTCTCTAGACCGCATTGGTCTCTGCAGTTCTCCACTGAACTTCATGCAGCAATTCAATTACAACCAACAACAGAACAGAATGAAAAATGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAACAAATTGACACTCTCAAATCCACCCCAGAAGAGGATCATGATAAATGCTTGATGATGGATACACAATATGTGGAGCCTTTTGACACCAAGGAAAAGCAAGGACAAGTTGTTGGTCGTTCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTATAGGAGAAGGAATGGGAAAGGAAACCAATCAAAAAACCTTGTAGCAGAGAGGAGGAGAAGGAAGAAGCTCAATGACAGGTTATATAACCTTCGTTCCTTGGTTCCAAGGATCTCAAAGCTAGATAGAGCTTCTATTCTTGGGGATGCCATTGAGTATGTGAAGGATTTGCAGAAACAAGTGAAAGAGCTTCAAGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGCAACTGCATCAATGGCAATAATCAATATGTGGGTGTCCAACCAGATATCCCAAAAGCAGAACATGGTAAGCATGTGGGGACATCAGGGAATGGCTATATGTCAAAACAAAAACAGGAAGATGCTACTGCCATTGACAAACAGACACAGCAAATGGAGCCTCAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTTGTGAAGGTGTTTTGTGAGCACAGGCCTAGTGGGTTTGTGAAATTGATGGAGGCCTTCAGCACTTTGGGTATGGAAGTAGTACATGCCACAGTAACCAGCCACAAAGGACTTGTGTCAAATGTGTTCAAAGTGGAGAAAAGGGACAGTGAAATGGTTGAGGCTGAAGATGTAAGAGAGTCACTGCTAGAACTTACAAGGAACCGATCAAGAGGGTGGACTCATGAGATGACAGCATCATCAGAAAATGGTGTGGGGAGGGATCAACATCACCTTCACAACCACCAGATTGGAGCCTATCATCCACACCAATTTCATAGTTAA 1698 0.4252 MNIIMQNLTERLRPLVGLNGWDYCVNWKLSEDQRFLEWLGCCCAGTENNQNAGEEHLFPVSSMAPCRDTMFPHPRIKACDLLSQLNTSIPIDSGIHAQTLLTNQPNWFNYSNSLDPNTLEETIGTQVLIPVPGGLIELFVTKQVPEDHQVIDFVTTQCIALMEQEAVNHSTSFNIDVNSMSNMQSNPLLGDENEGNNKNNHFQPSETSSLPHDISLDRIGLCSSPLNFMQQFNYNQQQNRMKNDAFSEEYQGSFLHDKQIDTLKSTPEEDHDKCLMMDTQYVEPFDTKEKQGQVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERRRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENSDTGAESNCINGNNQYVGVQPDIPKAEHGKHVGTSGNGYMSKQKQEDATAIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPSGFVKLMEAFSTLGMEVVHATVTSHKGLVSNVFKVEKRDSEMVEAEDVRESLLELTRNRSRGWTHEMTASSENGVGRDQHHLHNHQIGAYHPHQFHS. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08298 565 Coils Coil 362 389 - -
Seca7g08298 565 CDD bHLH_AtAMS_like 326 396 - -
Seca7g08298 565 Gene3D - 312 388 IPR036638 GO:0046983
Seca7g08298 565 SMART finulus 329 378 IPR011598 GO:0046983
Seca7g08298 565 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 205 525 - -
Seca7g08298 565 MobiDBLite consensus disorder prediction 285 334 - -
Seca7g08298 565 Pfam Helix-loop-helix DNA-binding domain 330 373 IPR011598 GO:0046983
Seca7g08298 565 CDD ACT_UUR-ACR-like 460 523 - -
Seca7g08298 565 MobiDBLite consensus disorder prediction 189 210 - -
Seca7g08298 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Seca7g08298 565 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 155 IPR025610 -
Seca7g08298 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 386 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08298 Seca-Chr7 187770643 187773924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08298 5 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.307 4.26e-153 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g08298 bHLH-MYC_N 2.6e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08298 - - gmx:100798282 825.854