Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08292 ATGTCGAATCCTGTACACTTTCTCCTCCCTGACGGTGCTAAATGGGAAGTCACTTGGAAAAAACGTGATGCTGAAGTGGTTTGGTTAGGCAATAATTGGAAGAAATTTGCAAAATTTTATTCTTTGGATCATCAGCATCTTTTGATGTTCAAATACGAAAGGAAGTCACAGTTTCAGGTTGTGATATGTGATCAAAGTTTCTTGGAAATAGGGTACCCTGTGTTCATTGGAACCTTTGGCGTTGAAGAGATCAGTGATCAGAGTGGCAACTCCAGAGAAATGTTTGAGGGATTTTCAACTCCCCCAAATAAAAGGCCAAATTCTTCTCCTCAAACTGATAGAGTCCCTGAAATGAAAACCTTCCATGAAGGTTTTGATACTAGTACTAAGCCAAAAAGTACAGGTGAAAGACAAAACATGACGGGGTCTAAGGCTATGGAAAGTGAAGAGCCGTTACTAAATACTAAAAGTAGCAATGCATTGAAGAGAGCCCATGCATATCCCACTGAGAACCCCTCCTTCATTCGTCAAATGCACACATCACACATTCAAACAAATTTTCTGTCACTACCTCGCAGGTTTTTAACAGCAAGTGAACAACAGGTGGAGAGTGCTACTCTTTGGGTTTCTGAGGAGAGAAGTTGGGATGTTAAGTTAAATGTGAATCATTCCAATGGCCAAACATCGTTTAAAACTGGTTGGAAGAATTTTGTAAAGGACAATCATTTGGAACTTGGTGATGTTTGTTTTTTTGAGAAAATTAAGTCAGCAGGAGTTTCATTTAGAGTTGTTATTTTTCGTGACCGAGAAGAATTAAGCCCTCCCCGGTTTCAAGTAATCCGAAAGAAAAGGTCAGGGGCTCAAAGTAACATCCCTCAAAAGGAAGGGGTTGATGGAAATGCCCAAAAGTACTCAACAACAACAACAACTATATTTGATGATTCTGAGGGTCCTAGAAATAACAGCATAATATCAGAGAATCACTTCACTCTCTCTTTAAAGCCTGATCAATTGGATTATGCGATCATACCGATGGAATTCATGAGAAAGTATGTGATTGATGGGGTAACTGATGTGAAGCTGCGAGATGGGGAGAGATTGTGGCCTGTGAAGCTAAACTATTCTTCAGAGTCATCCTACGGAGTATTCGTTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGGCAGGGGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTAGTGCTTCATGTTAGATTTCTTTTAAGGCGCATTGACTGA 1275 0.4024 MSNPVHFLLPDGAKWEVTWKKRDAEVVWLGNNWKKFAKFYSLDHQHLLMFKYERKSQFQVVICDQSFLEIGYPVFIGTFGVEEISDQSGNSREMFEGFSTPPNKRPNSSPQTDRVPEMKTFHEGFDTSTKPKSTGERQNMTGSKAMESEEPLLNTKSSNALKRAHAYPTENPSFIRQMHTSHIQTNFLSLPRRFLTASEQQVESATLWVSEERSWDVKLNVNHSNGQTSFKTGWKNFVKDNHLELGDVCFFEKIKSAGVSFRVVIFRDREELSPPRFQVIRKKRSGAQSNIPQKEGVDGNAQKYSTTTTTIFDDSEGPRNNSIISENHFTLSLKPDQLDYAIIPMEFMRKYVIDGVTDVKLRDGERLWPVKLNYSSESSYGVFVAGWSAFVRDCNLKAGDVCLFELVDEQNLVLHVRFLLRRID. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08292 424 CDD B3_DNA 172 267 IPR003340 GO:0003677
Seca7g08292 424 SMART B3_2 174 269 IPR003340 GO:0003677
Seca7g08292 424 SMART B3_2 329 422 IPR003340 GO:0003677
Seca7g08292 424 ProSiteProfiles B3 DNA-binding domain profile. 1 66 IPR003340 GO:0003677
Seca7g08292 424 SUPERFAMILY DNA-binding pseudobarrel domain 4 65 IPR015300 -
Seca7g08292 424 CDD B3_DNA 2 64 IPR003340 GO:0003677
Seca7g08292 424 SUPERFAMILY DNA-binding pseudobarrel domain 167 267 IPR015300 -
Seca7g08292 424 ProSiteProfiles B3 DNA-binding domain profile. 173 269 IPR003340 GO:0003677
Seca7g08292 424 MobiDBLite consensus disorder prediction 116 130 - -
Seca7g08292 424 Gene3D - 1 67 IPR015300 -
Seca7g08292 424 PANTHER B3 DOMAIN-CONTAINING 171 409 - -
Seca7g08292 424 ProSiteProfiles B3 DNA-binding domain profile. 326 422 IPR003340 GO:0003677
Seca7g08292 424 Gene3D - 316 421 IPR015300 -
Seca7g08292 424 Gene3D - 152 271 IPR015300 -
Seca7g08292 424 Pfam B3 DNA binding domain 175 267 IPR003340 GO:0003677
Seca7g08292 424 Pfam B3 DNA binding domain 340 417 IPR003340 GO:0003677
Seca7g08292 424 CDD B3_DNA 328 419 IPR003340 GO:0003677
Seca7g08292 424 MobiDBLite consensus disorder prediction 90 115 - -
Seca7g08292 424 MobiDBLite consensus disorder prediction 131 152 - -
Seca7g08292 424 MobiDBLite consensus disorder prediction 90 152 - -
Seca7g08292 424 SUPERFAMILY DNA-binding pseudobarrel domain 328 417 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08292 Seca-Chr7 187727070 187729027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08292 329 416 B3 DNA Binding Superfamily AT3G18990 36.559 4.68e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g08292 B3 4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08292 - - aprc:113871918 354.755