Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08291 ATGTCTTCCTCTTCTCAATGCCGTGCCTCTGCCGTTCACTTCTTCAAGATCATTGATGAAAACTGCCTTCGAAGTGGAGAGCTCAGGATTCCTCGGCGTTTCGTGAGTAATTATTGGGAAGGAATGTCAAACCCTCTAAACTTTTTGCTTCCTGACTGTGCTAAATGGGAAGTGACTTGGGAAAAACGTGGGGATGATGTATGGTTAGGGAATAACTGGAAGAAATTTGCATCATTTTATTCTCTGGATCATGAGCATCTTTTGATGTTCAAATACCAACGAAAGTCACAGTTTCAGGTTGTGATATGTGATCAAAGTGGCTTGGAAATTGGGTACCCTGTGTTTAAAGGAACTTTTGATGCTCAAGAGATCAGTGATCAGAGTGGTAACTCTCTAGAAATGTTTGATGGTTTTCCTAATAAGAGGCCAAAATCTCCTTTACCATTTTCTAATTCTTCTAAGAAGATGAAAACCAACCCAAACGAGGATCCTAAATGGCATTCCATCCAACGTGTGGAAACTGATATGGTTCAACCTCGGAGGACAGAGCTTGAGATGAAAAGATCCCATTCAGCTTTTGACAATACAAAGCCAAAAAGTAGAGGTAGAAAACGAAACATGAGGAGAAGCTCAAAATCTGAAGCTACTGAAAGTAAGAAGCCGTTACTAAATACTGAAAGTAGCAGTGCATTGGAGAGAGCCGAGGCTTACCGCACTACGAACCCCTCCTTCATTCGTGAGATGCGACGATCACATGTTAACAAACATATTATGCCACTACCAGGCAACTTTTTAACAGCACGTCAACAAAAGGAGGAAGATAGTGCTACTCTTCGGGTTTCTGAAAGAACTTGGGATGCTAAGTTAAATCTGAATCGTTGCAATGGACAAATAACACTTAGTAGTGGTTGGAAGAATTTTGTACAGGACAATAATTTGAAACTCGGTGATGTTTGTGTTTTGGAGCAAATTAAGTCAGAAGGAGTTTCATTTAAAGTTGTTATTTTTCATGCCAGAGGAGAAGAATCAACCTCTCCCGGGTTTCAAGCTTATGAGGCTGGAGCAAACCGAAGTAAACTGACAGGGGTTCAAAGTAACTTTGCTCAAAGGGAAGGGGTTGGAGGAATTGCAAAGAAGTTCCCAAAAACCAATAATATCTTTGATGGTTCTGAGTTTCCTAGAAATAATAACAGCACAATGTCAGAGAATCAGTTCACCCTCTCTTTAAAGCCTAATCAATTGAGTCATGCAGTAGGTAAAATTTTAATCATACCAATGAAATTCATCAGAAGATATGTCATTAATGAGGTAACTGATGTGAAGCTGCGAGTTGGGGAGAGATCATGGCCTGTAAAGCTATATTATTATTCAAAGCCATGCTATGGAAGATTCTCTGCGGGTTGGTCTGCATTTGTGAGGGACTGTAACTTGAAGCCAGGAGATGTTTGTCTCTTTGAGCTTGTTGATGAGCAAAATTTTGTGCTTCAAGTTAGTATTAAGGCACGTTAA 1509 0.4009 MSSSSQCRASAVHFFKIIDENCLRSGELRIPRRFVSNYWEGMSNPLNFLLPDCAKWEVTWEKRGDDVWLGNNWKKFASFYSLDHEHLLMFKYQRKSQFQVVICDQSGLEIGYPVFKGTFDAQEISDQSGNSLEMFDGFPNKRPKSPLPFSNSSKKMKTNPNEDPKWHSIQRVETDMVQPRRTELEMKRSHSAFDNTKPKSRGRKRNMRRSSKSEATESKKPLLNTESSSALERAEAYRTTNPSFIREMRRSHVNKHIMPLPGNFLTARQQKEEDSATLRVSERTWDAKLNLNRCNGQITLSSGWKNFVQDNNLKLGDVCVLEQIKSEGVSFKVVIFHARGEESTSPGFQAYEAGANRSKLTGVQSNFAQREGVGGIAKKFPKTNNIFDGSEFPRNNNSTMSENQFTLSLKPNQLSHAVGKILIIPMKFIRRYVINEVTDVKLRVGERSWPVKLYYYSKPCYGRFSAGWSAFVRDCNLKPGDVCLFELVDEQNFVLQVSIKAR. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08291 502 ProSiteProfiles B3 DNA-binding domain profile. 422 502 IPR003340 GO:0003677
Seca7g08291 502 Gene3D - 6 107 IPR015300 -
Seca7g08291 502 Gene3D - 222 340 IPR015300 -
Seca7g08291 502 Gene3D - 390 502 IPR015300 -
Seca7g08291 502 SUPERFAMILY DNA-binding pseudobarrel domain 405 499 IPR015300 -
Seca7g08291 502 CDD B3_DNA 13 104 IPR003340 GO:0003677
Seca7g08291 502 ProSiteProfiles B3 DNA-binding domain profile. 243 339 IPR003340 GO:0003677
Seca7g08291 502 MobiDBLite consensus disorder prediction 217 236 - -
Seca7g08291 502 PANTHER B3 DOMAIN-CONTAINING 327 491 - -
Seca7g08291 502 MobiDBLite consensus disorder prediction 158 200 - -
Seca7g08291 502 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Seca7g08291 502 MobiDBLite consensus disorder prediction 130 236 - -
Seca7g08291 502 Pfam B3 DNA binding domain 421 499 IPR003340 GO:0003677
Seca7g08291 502 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Seca7g08291 502 Pfam B3 DNA binding domain 244 337 IPR003340 GO:0003677
Seca7g08291 502 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Seca7g08291 502 SMART B3_2 408 501 IPR003340 GO:0003677
Seca7g08291 502 SMART B3_2 244 339 IPR003340 GO:0003677
Seca7g08291 502 SMART B3_2 14 106 IPR003340 GO:0003677
Seca7g08291 502 CDD B3_DNA 405 499 IPR003340 GO:0003677
Seca7g08291 502 CDD B3_DNA 242 336 IPR003340 GO:0003677
Seca7g08291 502 SUPERFAMILY DNA-binding pseudobarrel domain 239 342 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08291 Seca-Chr7 187719271 187721646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08291 405 498 B3 DNA Binding Superfamily AT3G18990 36.170 2.91e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g08291 B3 2.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08291 - - aprc:113871918 424.476