Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08289 ATGACAAGGACTATCATTGTCCGCCGTAACTACCTTCATTTTATCAAGAAATACCAAAGGTACGAGAAGAGGCACTCAAATATTCCAGCACATATATCTCCATGTTTCCGTGTGAAGGAGGGAGATCATGTTATTATTGGGCAGTGCAGGCCATTGTCAAAGACAGTGAGATTTAACGTGTTAAAAGTGATTCCTGCTGGGTCATCTGGAGCTGTTAAGAAAGCTTTTACAGGAATATGA 240 0.4083 MTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGAVKKAFTGI. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08289 79 Gene3D - 1 79 - -
Seca7g08289 79 PRINTS Ribosomal protein S17 family signature 8 31 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca7g08289 79 PRINTS Ribosomal protein S17 family signature 41 51 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca7g08289 79 PRINTS Ribosomal protein S17 family signature 51 58 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca7g08289 79 SUPERFAMILY Nucleic acid-binding proteins 1 67 IPR012340 -
Seca7g08289 79 Pfam Ribosomal protein S17 1 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca7g08289 79 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca7g08289 79 ProSitePatterns Ribosomal protein S17 signature. 41 53 IPR019979 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08289 Seca-Chr7 187714471 187714918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08289 1 79 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.873 9.48e-50 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08289 K02949 - csav:115697769 157.147