Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08286 ATGGCTACTCATCCTCCCAGGGGCAGGGGAAATGCTATTATGCCTGTCCGTTTCTTCAAGATTATTCTTAAAACTAATCTTCAAAGGCTTAAAATACCAAATGTGTTTACAAGGAAATATGGAGGTGATCTGTCAAATCCAGTGTCTGTCAAGCCTCCTGATGGCACTGAATGGGAAATAGAGTGGACAAAACAGAATGGTGAGGTTTGGTTTGAAAAAGGTTGGAAAGAATTTGCTGAAAGATATTCTCTAGATCATGGGTATTTGGTGTTGTTTATATATAAAGGAACTTCCCAGTTTGATGTACTAATACTTGACCGAAGTGCTGTAGAAATAGATTATCCTTTACAAGACACTTTTGATGATCAGAGTGATGATGACAAATCAATGGATAGTTTGGATGAATGGCCAAATCTGGAGGCTATACACCTGAGGCCATTAATTTCTCCTAGACCTCATAAGAAAATGAGAGGTGATAAGGCTACTCAAAGAACTTCATCACTGAATTGGCCAAGCAATGCTAGAGCTAGGGAAGTAGCTGAAAATTTCGTCTCTAACAATCCTTTTTTCACAAATCACATAAAGGCTGTTCATGTGGCAGAAAATCGGATGTATGTACCAGATTTGAAAGGTGTTGTTGGGAGCGAGGATCAGTATGTTAGGCTGCAGATAGGGAAAAGATCATGGGATGTGAAGTTGGTTGGTGGCCCAAGTGGAGGTCGCAGATTCTCTGCTGGTTGGTCTGTTTTTGCAATGGAAAGTGAGTTGCAACCGGGAGACGTTTGTGTCTTTGAACTCATAAACACACAAGATTCAATTTTTAAGTCTCGTGACTCTCAAGTTGAGTACAGATTGTTTCGGTACTGGCATGAAGTGACAATCACTAACTTTTCAACTTCAAATTCCATCCATCCATCCATGGCTACTACTTTTCTTCACAGGCGAAATGCAAATTTGCCTATCCATTTCTTCAAGATTATTCTTGAGACTAATGTTGAAAGGCTTAAAATACCCAACAAGTTTACAAAGAGGCATGAAGGTGGTTTCTCAAATCCAGTTTTTATCAAGCCTCCAGATGGTACTGAATGGGAAGTGTATTGGACAAAACAGAATGATGAGATTTGGTTCGAAAAGGGTTGGAAAGAATTTGCTGAAAATTACTCCCTAAATCACGGACATTTGGTGTTGTTCAAATATGAAGGAACTTCCCAATTTAATGTACTCATACTTGACCAGAGTGCTGTAGAAATAGACTATCCTTCCAATGACACACCTGTTGAAAATGACCACCTTGATCACCAGACTGATGATGAATCAGTTAGAATCTTGGAGGGAATGCCTCCAAACCTAAAGGCTAGACCAAAGTCACCATTGTCTTATCCTCAATCTCATAAGAAGATGAGAAATGCTGTTACACATGGGAATGTGGAAAGTAACTCCAATAAGCGAAAGTTGCTTGCAGGTGATCAATCTGATCCTGATCGAGGGAAAAAGTTTCAGAAAACTAGCAAACATGAACTGAAAGGTGTTGAGAAGACTACTGAAAGAAACTTGTCATTGAATACTCCTAGGACACTTAAAGCTCAGGAAATAGCCAAAAAAATCTCCACAGGCAATCCGTTTTTCACCGTGGACATAAGGCAATCTCATCTGGAAGAGAAGGCAGCGAAGCATGTACCAAAGTTCCTAAATAGTGAGAGCAAGGAGCATAATGTGAGGATGCAGCTTGGCGAAAGATGGTGGACAGTGAAGTTGGTGCTTTATCCTAATATGCAATATGATAGCTTCACATCTGGTTGGTCTTTGTTTGCAACAGAGAGTAAATTGGAAGATGGAAACGTTGTTGTCTTTGAGGTGATTGATAGACAAGTTCCAATGTTAAAAGTCCATGTCTTCGATTAG 1902 0.398 MATHPPRGRGNAIMPVRFFKIILKTNLQRLKIPNVFTRKYGGDLSNPVSVKPPDGTEWEIEWTKQNGEVWFEKGWKEFAERYSLDHGYLVLFIYKGTSQFDVLILDRSAVEIDYPLQDTFDDQSDDDKSMDSLDEWPNLEAIHLRPLISPRPHKKMRGDKATQRTSSLNWPSNARAREVAENFVSNNPFFTNHIKAVHVAENRMYVPDLKGVVGSEDQYVRLQIGKRSWDVKLVGGPSGGRRFSAGWSVFAMESELQPGDVCVFELINTQDSIFKSRDSQVEYRLFRYWHEVTITNFSTSNSIHPSMATTFLHRRNANLPIHFFKIILETNVERLKIPNKFTKRHEGGFSNPVFIKPPDGTEWEVYWTKQNDEIWFEKGWKEFAENYSLNHGHLVLFKYEGTSQFNVLILDQSAVEIDYPSNDTPVENDHLDHQTDDESVRILEGMPPNLKARPKSPLSYPQSHKKMRNAVTHGNVESNSNKRKLLAGDQSDPDRGKKFQKTSKHELKGVEKTTERNLSLNTPRTLKAQEIAKKISTGNPFFTVDIRQSHLEEKAAKHVPKFLNSESKEHNVRMQLGERWWTVKLVLYPNMQYDSFTSGWSLFATESKLEDGNVVVFEVIDRQVPMLKVHVFD. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08286 633 SMART B3_2 323 413 IPR003340 GO:0003677
Seca7g08286 633 SMART B3_2 189 280 IPR003340 GO:0003677
Seca7g08286 633 SMART B3_2 541 633 IPR003340 GO:0003677
Seca7g08286 633 SMART B3_2 18 108 IPR003340 GO:0003677
Seca7g08286 633 CDD B3_DNA 17 106 IPR003340 GO:0003677
Seca7g08286 633 ProSiteProfiles B3 DNA-binding domain profile. 581 633 IPR003340 GO:0003677
Seca7g08286 633 SUPERFAMILY DNA-binding pseudobarrel domain 321 420 IPR015300 -
Seca7g08286 633 ProSiteProfiles B3 DNA-binding domain profile. 227 289 IPR003340 GO:0003677
Seca7g08286 633 ProSiteProfiles B3 DNA-binding domain profile. 320 413 IPR003340 GO:0003677
Seca7g08286 633 SUPERFAMILY DNA-binding pseudobarrel domain 535 633 IPR015300 -
Seca7g08286 633 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Seca7g08286 633 MobiDBLite consensus disorder prediction 487 513 - -
Seca7g08286 633 MobiDBLite consensus disorder prediction 462 486 - -
Seca7g08286 633 MobiDBLite consensus disorder prediction 445 518 - -
Seca7g08286 633 SUPERFAMILY DNA-binding pseudobarrel domain 185 269 IPR015300 -
Seca7g08286 633 CDD B3_DNA 322 411 IPR003340 GO:0003677
Seca7g08286 633 Gene3D - 523 633 IPR015300 -
Seca7g08286 633 Gene3D - 171 278 IPR015300 -
Seca7g08286 633 CDD B3_DNA 227 275 IPR003340 GO:0003677
Seca7g08286 633 PANTHER B3 DOMAIN-CONTAINING 321 630 - -
Seca7g08286 633 Pfam B3 DNA binding domain 333 411 IPR003340 GO:0003677
Seca7g08286 633 Pfam B3 DNA binding domain 25 106 IPR003340 GO:0003677
Seca7g08286 633 Pfam B3 DNA binding domain 223 272 IPR003340 GO:0003677
Seca7g08286 633 Gene3D - 316 414 IPR015300 -
Seca7g08286 633 Gene3D - 14 109 IPR015300 -
Seca7g08286 633 SUPERFAMILY DNA-binding pseudobarrel domain 17 115 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08286 Seca-Chr7 187695066 187700765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08286 319 632 B3 DNA Binding Superfamily AT3G18990 27.193 3.90e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g08286 B3 2.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08286 - - aprc:113871917 570.466