Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08285 ATGGCTGCTCATTGTCCCCGCGGAAGTACTGCCATTTTGCCCATCCGTTTCTTCAAGATTATTCTAAAAACTAATCTTGAAAGGCTTAAAATACCTAATATGTTTACAAGGAGATATGGAGGCGGTCTCTCAGATCCAGTGTTTTTGAAGCCTCCAGATGGCACTGAATGGAAAATAGAGTTGCTAAAACAAAATGGTGAGGTTTGGTTCGGAAATGGTTGGGAAAAATTTGCTCAAAATTACTCTCTGGATCATGGATATTTGGTGCTGTTTACATATAAAGGAACTTGCCAGCTTGATGTAGTTATACTTGGCATGAGTGCTCTAGAAATAGATTATCCTCTGTGTGATCAAAATCAGAGTGAAGTTGATGAATCAGTTGAAATTTTGGATGAACCACCAAATAAGGATGCTGAGGCAGAGGCTGGACAGAAGAATTCTCATAAGAAAATGAGAGTCATAGGTGAGAATGAGATTGAGAAAGCTACTCAAAGAACTTCATCGTTGAATTGGCCAATGGATGCTAGAGCTCAGGAAGTAGCTGAAAAATTCGTCTCATACAATCCTTTTTTCACGGTTTGCATAAAGCCTATTGTTCTGAAAAAATGTCGGGTGAGTGTTCCAAATTTATTAAAAGCTTATATTGAGAAGAAGAAGAAGAATGAGTATGTGACTCTGCAGATTGGGAAAAGATCATGGAATGTAAAGTTGCTCTGTCGTCATGGCCATACCGGCCATCTCTCTGCTGGTTGGTCTGTGTTTGCAAAGGAAAGTGAATTGCAACCAGGGGACGTTTGTGTCTTTGAACTCATAAGTGAAGATTTAGTTTTTAAAGTGCATGTTTTCAAACGCCACAGTTTAGAGCATGAAAATTTGAACAAGTAG 885 0.3898 MAAHCPRGSTAILPIRFFKIILKTNLERLKIPNMFTRRYGGGLSDPVFLKPPDGTEWKIELLKQNGEVWFGNGWEKFAQNYSLDHGYLVLFTYKGTCQLDVVILGMSALEIDYPLCDQNQSEVDESVEILDEPPNKDAEAEAGQKNSHKKMRVIGENEIEKATQRTSSLNWPMDARAQEVAEKFVSYNPFFTVCIKPIVLKKCRVSVPNLLKAYIEKKKKNEYVTLQIGKRSWNVKLLCRHGHTGHLSAGWSVFAKESELQPGDVCVFELISEDLVFKVHVFKRHSLEHENLNK. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08285 294 PANTHER B3 DOMAIN-CONTAINING 16 279 - -
Seca7g08285 294 Gene3D - 173 286 IPR015300 -
Seca7g08285 294 Pfam B3 DNA binding domain 24 99 IPR003340 GO:0003677
Seca7g08285 294 Pfam B3 DNA binding domain 190 284 IPR003340 GO:0003677
Seca7g08285 294 SUPERFAMILY DNA-binding pseudobarrel domain 187 284 IPR015300 -
Seca7g08285 294 Gene3D - 14 108 IPR015300 -
Seca7g08285 294 ProSiteProfiles B3 DNA-binding domain profile. 190 285 IPR003340 GO:0003677
Seca7g08285 294 CDD B3_DNA 190 283 IPR003340 GO:0003677
Seca7g08285 294 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Seca7g08285 294 SMART B3_2 17 107 IPR003340 GO:0003677
Seca7g08285 294 SMART B3_2 190 285 IPR003340 GO:0003677
Seca7g08285 294 CDD B3_DNA 16 104 IPR003340 GO:0003677
Seca7g08285 294 SUPERFAMILY DNA-binding pseudobarrel domain 16 114 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08285 Seca-Chr7 187692912 187694159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08285 13 287 B3 DNA Binding Superfamily AT3G18990 27.616 3.30e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g08285 B3 8.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08285 - - gmx:102661781 306.219