Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g08285 | ATGGCTGCTCATTGTCCCCGCGGAAGTACTGCCATTTTGCCCATCCGTTTCTTCAAGATTATTCTAAAAACTAATCTTGAAAGGCTTAAAATACCTAATATGTTTACAAGGAGATATGGAGGCGGTCTCTCAGATCCAGTGTTTTTGAAGCCTCCAGATGGCACTGAATGGAAAATAGAGTTGCTAAAACAAAATGGTGAGGTTTGGTTCGGAAATGGTTGGGAAAAATTTGCTCAAAATTACTCTCTGGATCATGGATATTTGGTGCTGTTTACATATAAAGGAACTTGCCAGCTTGATGTAGTTATACTTGGCATGAGTGCTCTAGAAATAGATTATCCTCTGTGTGATCAAAATCAGAGTGAAGTTGATGAATCAGTTGAAATTTTGGATGAACCACCAAATAAGGATGCTGAGGCAGAGGCTGGACAGAAGAATTCTCATAAGAAAATGAGAGTCATAGGTGAGAATGAGATTGAGAAAGCTACTCAAAGAACTTCATCGTTGAATTGGCCAATGGATGCTAGAGCTCAGGAAGTAGCTGAAAAATTCGTCTCATACAATCCTTTTTTCACGGTTTGCATAAAGCCTATTGTTCTGAAAAAATGTCGGGTGAGTGTTCCAAATTTATTAAAAGCTTATATTGAGAAGAAGAAGAAGAATGAGTATGTGACTCTGCAGATTGGGAAAAGATCATGGAATGTAAAGTTGCTCTGTCGTCATGGCCATACCGGCCATCTCTCTGCTGGTTGGTCTGTGTTTGCAAAGGAAAGTGAATTGCAACCAGGGGACGTTTGTGTCTTTGAACTCATAAGTGAAGATTTAGTTTTTAAAGTGCATGTTTTCAAACGCCACAGTTTAGAGCATGAAAATTTGAACAAGTAG | 885 | 0.3898 | MAAHCPRGSTAILPIRFFKIILKTNLERLKIPNMFTRRYGGGLSDPVFLKPPDGTEWKIELLKQNGEVWFGNGWEKFAQNYSLDHGYLVLFTYKGTCQLDVVILGMSALEIDYPLCDQNQSEVDESVEILDEPPNKDAEAEAGQKNSHKKMRVIGENEIEKATQRTSSLNWPMDARAQEVAEKFVSYNPFFTVCIKPIVLKKCRVSVPNLLKAYIEKKKKNEYVTLQIGKRSWNVKLLCRHGHTGHLSAGWSVFAKESELQPGDVCVFELISEDLVFKVHVFKRHSLEHENLNK. | 295 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g08285 | 294 | PANTHER | B3 DOMAIN-CONTAINING | 16 | 279 | - | - | |
Seca7g08285 | 294 | Gene3D | - | 173 | 286 | IPR015300 | - | |
Seca7g08285 | 294 | Pfam | B3 DNA binding domain | 24 | 99 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | Pfam | B3 DNA binding domain | 190 | 284 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | SUPERFAMILY | DNA-binding pseudobarrel domain | 187 | 284 | IPR015300 | - | |
Seca7g08285 | 294 | Gene3D | - | 14 | 108 | IPR015300 | - | |
Seca7g08285 | 294 | ProSiteProfiles | B3 DNA-binding domain profile. | 190 | 285 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | CDD | B3_DNA | 190 | 283 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | ProSiteProfiles | B3 DNA-binding domain profile. | 14 | 107 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | SMART | B3_2 | 17 | 107 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | SMART | B3_2 | 190 | 285 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | CDD | B3_DNA | 16 | 104 | IPR003340 | GO:0003677 | |
Seca7g08285 | 294 | SUPERFAMILY | DNA-binding pseudobarrel domain | 16 | 114 | IPR015300 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g08285 | Seca-Chr7 | 187692912 | 187694159 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g08285 | 13 | 287 | B3 DNA Binding Superfamily | AT3G18990 | 27.616 | 3.30e-31 | 118 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Seca7g08285 | B3 | 8.9e-14 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g08285 | - | - | gmx:102661781 | 306.219 |