Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08276 ATGCAACAACTGAACAGAAGCACCCCAACCCAAGTCAGCCAAACACAGCAAAGAGAGTTTCAGAGCCCTTTTTTTGCCCTTTCCATGTCAGTGACCCTAAACGGTAACAGTACAGTACACTCTGCTGCTGCCTCCGCTGAATTTCAGACAAACAGTGTCATTCATCCCTCACCCAATCAACCATCAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACATAACCTGCCTTGGAAGCTAAAACAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAGCATTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGACGAGACAGTTTCATCACCCACAGGGCTTTCTGTGATGCATTGGCTCAAGAGAGTGCAAGACAGCCACCAAACCTGAGTGGTGGAATTGGCAGTCACCTATATGGGAGTAGCAGCAACAACAACATGGCTTTAGGCCTATCTCAGGTGGTGGGTCCCCAATTGTCCAACATGCAAGACACCCAATCCCCAACTGAACAACTCTTACGACTCGGCGCTCGAACCGGACAATTCGACCACATTCTCCCACCACCACCACAAGCACCCTCACCTTTCAGTAGACCCTCTCCTTCACCTAATTCCTTCTTCATCCCTGATCAATCCAACCAAAATTACCATCCTGATAAGCCATTAATCCACCACCAACAAGGACTAATGCAATTGTCTCATGACCTTAACAATCACAACAATTCCCCTTCCAATAATAACCACCTCTTCAACCTTCCCTTCCTTTCAAGTAACAACAGCACTAACAGCAGCAACAACTCCTTCTCTGAACACTTCAACAACGGAAACGACGTCGCTTCCAATTTCTTCACTGCAGGAGGAGGAGGTGGCGGTGTGATAACAACTTCAAGTGCGCCTTCTCTCTTCAGCGCGTCGCTCCAAAACAACAACAGTGGAGTCGCTCACATGTCAGCAACTGCACTCCTTCAGAAAGCGGCTCAAATGGGTGCAACTTCGAGTAACGGCACAGCCTCGTTGTTGAAAAGCTTCGGAAGCAGTTCGTCTGCGAGCAGTGGAGGAACGAAATCTGATAGGGGGAATATGGTTAGTTATGGGAGCATTTTTGGCGGGAATGAACAGAGTGGTGGAAGTAACCTGCAAGATCTGATGAACTCGTTTGCGGCTGGTGGCGGGAACTCTTCGATGTTTGAGAGTGGAGGAGGGTTTGAAGCGGCATATGATCATAGGGATCAGCCGAAGATGGCAATGACTAGGGATTTCTTAGGTGTGGGTCAGATAGTGAGAAGCATGAGTGGTGGTGGTGCAGGAGCAGGAGGAAGAGAACAGCAGCAACAGCATGGGTTTAACTTGGAGGTAGAAAGAAATAATGCTGCGGCGCCGTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1692 0.4817 MQQLNRSTPTQVSQTQQREFQSPFFALSMSVTLNGNSTVHSAAASAEFQTNSVIHPSPNQPSDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSGGIGSHLYGSSSNNNMALGLSQVVGPQLSNMQDTQSPTEQLLRLGARTGQFDHILPPPPQAPSPFSRPSPSPNSFFIPDQSNQNYHPDKPLIHHQQGLMQLSHDLNNHNNSPSNNNHLFNLPFLSSNNSTNSSNNSFSEHFNNGNDVASNFFTAGGGGGGVITTSSAPSLFSASLQNNNSGVAHMSATALLQKAAQMGATSSNGTASLLKSFGSSSSASSGGTKSDRGNMVSYGSIFGGNEQSGGSNLQDLMNSFAAGGGNSSMFESGGGFEAAYDHRDQPKMAMTRDFLGVGQIVRSMSGGGAGAGGREQQQQHGFNLEVERNNAAAPSGQSFGGGGGNFQ. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08276 563 Pfam Zinc-finger double-stranded RNA-binding 82 104 IPR022755 -
Seca7g08276 563 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 531 IPR031140 -
Seca7g08276 563 FunFam protein indeterminate-domain 12-like 61 129 - -
Seca7g08276 563 MobiDBLite consensus disorder prediction 532 563 - -
Seca7g08276 563 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Seca7g08276 563 MobiDBLite consensus disorder prediction 521 563 - -
Seca7g08276 563 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Seca7g08276 563 MobiDBLite consensus disorder prediction 276 292 - -
Seca7g08276 563 MobiDBLite consensus disorder prediction 271 294 - -
Seca7g08276 563 SMART c2h2final6 82 104 IPR013087 -
Seca7g08276 563 SMART c2h2final6 123 153 IPR013087 -
Seca7g08276 563 SMART c2h2final6 158 178 IPR013087 -
Seca7g08276 563 SUPERFAMILY beta-beta-alpha zinc fingers 81 178 IPR036236 -
Seca7g08276 563 Gene3D Classic Zinc Finger 136 215 - -
Seca7g08276 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Seca7g08276 563 Gene3D Classic Zinc Finger 60 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08276 Seca-Chr7 187541633 187548458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08276 59 248 IDZ Gene Family AT2G02070 80.905 3.70e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g08276 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08276 K25870 - gmx:100786121 556.984