Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08265 ATGGGTGTGGGCATATCAGTGTTGATAGCACTGAAAGCAACAACCCTATTTCTATGCTTCGTTTACCTAAGAAACCTTGGTCTCACTCTCTTATCTGCTCCCTTTCTTTATGCTTCTTTGGTCTCTTTCTTGGTCTCAATCGCATCACACCCATCCATTGACCTTCCAATGCTTCTAGGGAAAAGCAGTGATGGAACCTTCCCCATTTTGTCACTCATCATCTTCAGCCCTTATCTCTACTTCGTTCGAATCTTCTCCACTCTTCGAAGACTCAGAAGTGGGGAACCTCCTTACACCCAAGTTCATGAGGGCCTCTATGTCGGTGGCTGGCCTTCTTCGCCGGAAAAGTTGCCGCCCGGTGACCCTGCTATCATTGACTGCACTTGTGAGTTTCCGAGGATGAAAGGGTTCTCTGGTGGGCTACCTTATATGTGCGTTCCAACTTGGGATACTAGGTCCCCTCAACCTGCTGATATTGAATCTGCTGTCAAGTGGGCTTGTCGGAAGAGGGAACTCAATAGGCCCATTTTTGTCCACTGTGCTTATGGTCATGGAAGAAGTGTTGCTGTTATGTGTGCACTGTTAGTGGCACTAGGTATCACAGAGGATTGGAAAAATGCTGAGAAGCTGATCAAGCAAAAACGCCCTTACATTCGGATGAATGCTCTCCATCGCAAGGCGCTTGAAGAATGGTCCAGACACCGATTATCTGTGCCAAAGAAGTAG 726 0.4738 MGVGISVLIALKATTLFLCFVYLRNLGLTLLSAPFLYASLVSFLVSIASHPSIDLPMLLGKSSDGTFPILSLIIFSPYLYFVRIFSTLRRLRSGEPPYTQVHEGLYVGGWPSSPEKLPPGDPAIIDCTCEFPRMKGFSGGLPYMCVPTWDTRSPQPADIESAVKWACRKRELNRPIFVHCAYGHGRSVAVMCALLVALGITEDWKNAEKLIKQKRPYIRMNALHRKALEEWSRHRLSVPKK. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08265 241 PANTHER - 3 240 - -
Seca7g08265 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 82 235 IPR029021 -
Seca7g08265 241 Gene3D Protein tyrosine phosphatase superfamily 98 236 IPR029021 -
Seca7g08265 241 Pfam Dual specificity phosphatase, catalytic domain 124 233 IPR000340 GO:0008138|GO:0016311
Seca7g08265 241 SMART dsp_5 97 234 IPR020422 GO:0006470|GO:0008138
Seca7g08265 241 CDD DSP_bac 94 233 - -
Seca7g08265 241 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 157 226 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08265 Seca-Chr7 187436176 187440240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08265 141 233 Protein tyrosine phosphatase (PTP) family AT5G56610 30.526 5.29e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08265 - - aprc:113873203 464.922