Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08258 ATGGGATCCGAAGCTCTTGTTCCAAAATGGGCATCCAATCCTTGCATCATGGGAATCGATGAAGCTGGAAGAGGCCCTGTTCTAGGGCCCATGGTGTATGGTTGCTTGTACTGTTCTCGCTCTTACCAGAAGACCCTAGCTACTTTGAGTTTTGCAGATTCTAAAACACTAAAAGAAGAGAAGAGGGAAGAGTTATTTGAAGCTTTAAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCATGGGCCTCATCGATAGGGTACTAAAGATGGGAGTGCTTCTAACCGAGGTTTATATAGATACGGTTGGAGATGCGGGGAAATATGAAATGAAGCTGTCTAAAAGTTTCCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCAAGCTTTAAGAGATTGGGTGCTTGAAGAGACTGCTGAAAACATGCATAAGAACTTCGGCTCTGGGTATCCTGGAGATCCTCATACCAAGTCTTGGCTAGAACACCACAAACATTCTATATTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCACCACTTATTTTAAAGATGTTGCAGAGGTCTTATGGGAGTCTGACAAATCGGATGAAGACGGTGGCTGCAATAATAATGGCAAGCGGCAATTGAAATTAAGCAATGTAGGTTTCACCACATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGGCGCTGTAGGTTTTTTCAAGCTCGGAAACTTGAGCAACTCACTCATTTCTAA 894 0.4251 MGSEALVPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCSRSYQKTLATLSFADSKTLKEEKREELFEALKANDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSKSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDQALRDWVLEETAENMHKNFGSGYPGDPHTKSWLEHHKHSIFGFPTLVRFSWGTCTTYFKDVAEVLWESDKSDEDGGCNNNGKRQLKLSNVGFTTSKRRSEEIESSGKGRCRFFQARKLEQLTHF. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08258 297 CDD RNase_HII_eukaryota_like 17 233 - -
Seca7g08258 297 FunFam Ribonuclease 2 186 - -
Seca7g08258 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 284 IPR001352 GO:0003723|GO:0004523
Seca7g08258 297 Gene3D - 3 186 IPR036397 GO:0003676
Seca7g08258 297 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Seca7g08258 297 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Seca7g08258 297 FunFam Ribonuclease 188 235 - -
Seca7g08258 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Seca7g08258 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Seca7g08258 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08258 Seca-Chr7 187393684 187397114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08258 1 297 Core DNA Replication Machinery Family AT2G25100 67.677 5.25e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08258 K10743 - gmx:100779875 528.48