Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08248 ATCGCGTTTTCTAAAATCTCTCACCAAACGCAGAAGCGAAATCTCCTAGAAAGCGAGTCTCTCTCTCTCTCTCTCTCTAAACCCACAGAGTCAGCGAAAACAACATCACGAAACAGAACAACACATCACAACACCTTTGATTTCAATTCAACTAACAAAACGACAACAAAGATGTTTCGAGAGACCACTGCCATGGCCGCCACCACGACGCGGTGGCCGACTCAGCAAGCTCAACCGAGTCAGTGGACTCGTTACCAGGACAAACTCTTTGAGCGAGCGCTATTGACCGTGTCGGATGACCAGCCGGACCGGTGGGAGAAGATCGCCGAGCAGGTTCCTGGAAAGTCGGCGGCGGAGGTGAGGAACCACTACGAGGCCTTGGTTCACGACGTGTATGAGATCGATTCAGGCCGAATCGAGGTTCCGAGTTACTCAGATGACTCAGCGGCGGATTGTGGATTGTCAAATTGGGATTCTTCTAATCAGATCTCTTTTGGGTCGAAACCTAAACATAGCGAAAACGAGAGGAAGAAAGGAACACCGTGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTGAGCAAATTTGGCAAGGGAGATTGGAGAAGCATATCAAGAAATGTTGTTGTGTCAAGAACACCGACTCAAGTAGCTAGCCATGCTCAGAAATACTTCCTCCGCCAGAATTCGGTGAAGAAAGAGAGGAAAAGGTCAAGCATCCATGACATAACCACAGTGGATAGTAATTCAGTGCCTGTCCCCATTGATCAGAATTGGGTTCCTCCTCCAGGTGGTTCAATGCAGCAGTCACAAGAAATGCAGCAATACCCATCAAACAATTTGCATGATCATATGGGTAGATTTGGGTACTCAAACTTTGGGTTTTGA 891 0.4792 IAFSKISHQTQKRNLLESESLSLSLSKPTESAKTTSRNRTTHHNTFDFNSTNKTTTKMFRETTAMAATTTRWPTQQAQPSQWTRYQDKLFERALLTVSDDQPDRWEKIAEQVPGKSAAEVRNHYEALVHDVYEIDSGRIEVPSYSDDSAADCGLSNWDSSNQISFGSKPKHSENERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVSRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSMQQSQEMQQYPSNNLHDHMGRFGYSNFGF. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08248 296 MobiDBLite consensus disorder prediction 22 51 - -
Seca7g08248 296 SUPERFAMILY Homeodomain-like 176 231 IPR009057 -
Seca7g08248 296 CDD SANT 181 226 IPR001005 -
Seca7g08248 296 FunFam transcription factor MYB1R1 180 231 - -
Seca7g08248 296 Gene3D - 74 141 - -
Seca7g08248 296 Pfam Myb-like DNA-binding domain 80 124 IPR001005 -
Seca7g08248 296 Pfam Myb-like DNA-binding domain 181 226 IPR001005 -
Seca7g08248 296 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Seca7g08248 296 ProSiteProfiles Myb-like domain profile. 74 128 IPR001005 -
Seca7g08248 296 Gene3D - 180 232 - -
Seca7g08248 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 230 IPR017930 -
Seca7g08248 296 ProSiteProfiles Myb-like domain profile. 174 226 IPR001005 -
Seca7g08248 296 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 77 281 IPR043363 -
Seca7g08248 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 177 229 IPR006447 GO:0003677
Seca7g08248 296 FunFam Transcription factor SRM1 74 141 - -
Seca7g08248 296 SMART sant 178 228 IPR001005 -
Seca7g08248 296 SMART sant 78 130 IPR001005 -
Seca7g08248 296 CDD SANT 82 128 IPR001005 -
Seca7g08248 296 ProSiteProfiles SANT domain profile. 177 230 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08248 Seca-Chr7 187302732 187304900 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g08248 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08248 - - gmx:547481 378.252