Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08240 ATGCTTCCCATCACCTGCATTCTTTTAATGTGCCTCCTCCTCAGTTCTTTCTCACCCCCAATCAAAGCTAAACCCTTCTCCAACCTCACCTTGCCCCACCAACACCCTTACCCAGAAGCTGTAGTTCACGAAGTTCAACGTTTCTTTTTTTTTTTTTTCTATTGCAGGAAAATCAATGTGTCACTCTCCAGAAGGCAAATGCTCTCAAAGGACCAAGCTACTTCATGTCTCACCGGAAACCCAGTGGACGATTGCTGGCGTTGCGACCCAAACTGGGCGGCGAACCGTCAGAAGCTGGCGGATTGCGGCATCGGTTTCGGACGCGCCGCCATGGGCGGAAAAGGCGGTCAGATCTACATCGTAACTGATTCCTCTGATAGGGACCCAGCGAACCCCGTTCCAGGAACCCTCCGTCACGCCGTTATCCAAGATGAACCGTTATGGATCGTTTTCGCCGCCGACATGACCATAAATCTCAGGCACGAACTAATCTTCAACAGCTTCAAAACCGTTGACGGTCGCGGCGCTAACGTCCACGTCACCGGCCACGGCTGCATAACGCTCCAGTACGTGTCCAACGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGTAACACTAACATACGCGCCAGTCCAACGCATGTAGGGTGGAGAGGCGTATCGGACGGTGATGGGATATCCATCTTCGGATCAAGGAACATCTGGATCGACCATTGTTCACTCTCTTACTGCACGGACGGCTTGATCGATGCCATCATGGGGTCCACTGCTATAACCATATCTAACAACCATTTCGCGCACCACGATGAGGTAATGCTCCTTGGCCACAACGATAAGTATTCGCCAGATAGAGGGATGCAGGTTACCATTGCGTTCAATCACTTCGGTGAAGGGCTTGTCCAGCGAATGCCACGTTGCAGGCTCGGTTATATACATGTAGTTAACAATGATTTCACGCAGTGGGAGATGTATGCTATCGGCGGTAGCGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCACCGATCCTAATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGAGGGACAGTGGAGTGATTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTTTTTGTACCATCGGGTGCAGGGCTCAGTGCTCAGTACGCACAAGCGTCCAGTGTGCAACCCAAATCAGCGGTGCAAATTGACCAGCTCACAATGTACTCAGGAGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCCACCAGCAAGGGAAACAGTGAGGGTTCCAGCAGTGACGATGGGGACTTCTTCGGTATGATATTCAAAGGTAGCAGCAACCAAGCAGCACCACCGCCATCACCTTCCTCATCCTTTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCATTTTGGACACTACCACCAACCATGTTATTCTATTATCATTACTATGA 1527 0.5036 MLPITCILLMCLLLSSFSPPIKAKPFSNLTLPHQHPYPEAVVHEVQRFFFFFFYCRKINVSLSRRQMLSKDQATSCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRAAMGGKGGQIYIVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPTDPNAKEVTKRVDTDEGQWSDWNWRTEGDIMVNGAFFVPSGAGLSAQYAQASSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSEGSSSDDGDFFGMIFKGSSNQAAPPPSPSSSFVFVSTFLSLLIIFILDTTTNHVILLSLL. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08240 508 MobiDBLite consensus disorder prediction 340 362 - -
Seca7g08240 508 PANTHER PECTATE LYASE 18-RELATED 35 420 IPR045032 GO:0030570
Seca7g08240 508 SMART amb_all 154 351 IPR002022 -
Seca7g08240 508 FunFam Pectate lyase 79 421 - -
Seca7g08240 508 SUPERFAMILY Pectin lyase-like 63 395 IPR011050 -
Seca7g08240 508 Gene3D - 79 421 IPR012334 -
Seca7g08240 508 Pfam Pectate lyase 162 343 IPR002022 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 370 394 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Seca7g08240 508 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08240 Seca-Chr7 187206974 187213061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08240 1 505 Polysaccharide Lyase AT3G53190 60.784 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08240 K01728 - gmx:100808438 837.795