Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08238 ATGGAGGCTTTGCAAAATATAACAGGAAGAGATATGAAGGCTGATCATGAGGGTGTAATGCCAGCTCATGAAATTCAAAACCAGAATGAAGATGGAAGTGAAATCTTGAATAGCACTGTCAGAGGTGGTGCTGATAGCTGGCCAGAATCTGAGATTACAAGGCTTCAACAGTTGAGGACTGAGATGGAGACAGGGTTTATTCCACAAAGTGGGGGGTGTTCAGAAGAGGTTACATGGGAGGAGGTAGCAACCAAAATGGCTTGTTTTGGATATGAGAGAACTGCTTTGATGTGCAAGGAGAAATGGGAAAGTATCTCTGGAGTAGACAATTTAAGAGATTGA 342 0.4269 MEALQNITGRDMKADHEGVMPAHEIQNQNEDGSEILNSTVRGGADSWPESEITRLQQLRTEMETGFIPQSGGCSEEVTWEEVATKMACFGYERTALMCKEKWESISGVDNLRD. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08238 113 ProSiteProfiles Myb-like domain profile. 46 106 IPR001005 -
Seca7g08238 113 PANTHER FI21293P1 1 105 - -
Seca7g08238 113 Gene3D - 47 107 - -
Seca7g08238 113 Pfam Myb/SANT-like DNA-binding domain 45 105 IPR044822 -
Seca7g08238 113 CDD GT1 47 105 - -
Seca7g08238 113 FunFam Trihelix transcription factor GT-2 47 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08238 Seca-Chr7 187197120 187198064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08238 1 106 Trihelix Transcription Factor Family AT5G03680 41.176 1.12e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca7g08238 Myb_DNA-bind_4 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08238 - - aprc:113870891 140.198