Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08219 ATGGCCACCGATGCCCACGACTCTCGTCGCAAGCATCGCCGATCATCATCTCCGGAGGACGTCGAAAGAACCTCGAAGCGCCACAAGCACCGCCACCGCCACCGCCACGGGAGCAAAAAACGCGATGAAGAAGAGATTGAATACGATGGGGGAACAGTTGCCGCGGTTCATTCTCCAATTCCCACTCCTAATCCTGCTCCGCACAGCAATCTCCCTGACGATGATGTGGAGGAGGGAGAGATTCTCGAAGACGAGGCTCTCGATGGCGTTGGAAAAAAGCAGACAGAATCTGATGTCGAACCTGGTGAAATCGAGGTGACAGGAGATCGAGATGCTCGATCTGATGAGAAAAATCCGGGAATTCCCACTAGAAGTTCAAAATCTAAAAGTGAGGACTTTAGGAACGATAAATTTACTAGTCCTACATTGGATGCAGAAGATGGGACATGGCGTCAGAGCCACACTAGTTGTGAAATTCATGAATATGATGGTTCTCCAAACCACCCAAGGGCTGAGACTCAAGGTGGGAGGGATGCTCGAGTTGGTACAGTTGGTTTGGGCAATGGGTATTTGGATCCTAAATCTTCCAAAGGGGATAAGTTGCACAATGGGAGAGTTGGACATTTTAAAGGAAATGAGAAACTAAAAGGTGACTTTGATGATGAAGCACTGGAGGCTAATAGAAAGGAAGTAAGCCATCGGCATTCATCATCTGAAAGTGGAGGAGAAAAATATAGAATGTCAGGAAGTTCTCCTTCTCATGATAGATACAGAAGTCGATCAAGATCAACTGGTCATACTAGGGACAGGTCTCGTTCTCGTAGTATAGTAGAAGAATATGCTCATTCCAAGAGAAGGCACTCCAGGGAACAAGGGTCCCTTCATTCTACTAGCAGACGTAAGACTGACTATGACCTTGATGAGGAAAGAGTGAGAGCAAGCAGAAGGGAGCATCGTCATGCCAGTATAGATATGGTGGATGATGATAGAAGGGAACACAGTACCAGATATCACAATCGGGAGACCCGGGACAGCGATAGGAGTAGGGATAGAGATGTGGATAGAGACTTACACAGGGAAAAGAAACGAGAGGAAGCAAGCAGGAATAAGGAAGTTGATTGGGTGCGAAGAAGGGAAAAAGAACGTGAAAGGAGCCGTGAGAAGTATAGAAGGGATGTGGAGAAAGATAGGAGCAGGGAAAGGGAGGAGGATAGGGATAGGAGGAGAGAAAAGGAAAGAGATAGGAGCTGGGAGACAGTATTTGAGAGGGATAGGAGAAGGGAAAAGGAAAGAGATAGGAGCAGGGACAGAACAAGGGGTGGCGAGAGAGATAGAGACTGGGAGAGTGAAAGGGATTATAGGAATCGAGAAAAAGATAACATTAAGGAGAGGGACAGGCGAGATGATAGATATAGGCACAAGGATAAAGACGCTGTGAATGGTAAGGATAAGCATCTGCGTCATGATGATGGTAATGACAGTGGCGATAGATATAGAAAGCATTCAAGACATGAAGAAAATGAATACCGTGCCAAGAGAAAAAGAAATTCTGACCATCCTGTAAAAGTTTACAACTCTATGGGAAGTACCATTGAAGAGGATGAAAGGAAATTAAAAAGCGGTGAGGTTGAACAAGATGACTTAGATGAGGATACATTGCAATTGCCTGAACAAGAAGAAGAAGATCTCAACAGGATCAAAGAGGAAAGTAGAAGGAGAAGGGAGGCGATAATGGCGAAATACAAGAAGCAGAATCTGCAGGTAGAACAAACAGTTGGAAATGAAGGAAAAGACAAGGGTGCGGACATTCCTACTGACATTTCTGAAGCAATTGATGGTAAAAATGATGATGTTGATGATGCGGAAGCAGCAGAACCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTAAAGGTTGAGAAGATATCTGGTGCTGGGGGCCTGGGAGAGGGTACTCCAAAGAGTGAGAGGTCAGCTGAGAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTCCGGAAATCAGGAAAAGGAGATGGTTTACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGATGCAGAGGGTTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGAGTCTTTTCAACTGTTGTACGGGCAAAAAATCTAAAACCTGGTAATGGTGAGCCAGAAGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTGGTATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCACTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGAAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGAGCATATGCAAAACAGCTTTTTATTGCGCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGCGATATAAAGCCTGATAATATGTTGGTGAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGCAAGAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGGTTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTACACAGGGAAGGTTCTTTTTCCAGGGCTTACAAACAATGACATGTTGCGGCTTCACATGGAATTGAAGGGCCCTTTTCCAAAGAAGATGCTAAGAAAGGGAGCATTTACTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGATCCTGTAACAAAAAAGGCCATAAAGCGGATGATTCTCAACATAAAGCCAAAAGATATTGGGACAATTATTGCTGGCTCTCCTGGGGAGGATCCAAAAATGTTATCTAACTTTAAGGATCTTCTGGATAAAGTTTTTATCTTGGATCCAGACAAGAGGTTGACAGTCTCACAAGCATTGAATCACCCTTTCATCACTGGCAAGTGA 3096 0.4351 MATDAHDSRRKHRRSSSPEDVERTSKRHKHRHRHRHGSKKRDEEEIEYDGGTVAAVHSPIPTPNPAPHSNLPDDDVEEGEILEDEALDGVGKKQTESDVEPGEIEVTGDRDARSDEKNPGIPTRSSKSKSEDFRNDKFTSPTLDAEDGTWRQSHTSCEIHEYDGSPNHPRAETQGGRDARVGTVGLGNGYLDPKSSKGDKLHNGRVGHFKGNEKLKGDFDDEALEANRKEVSHRHSSSESGGEKYRMSGSSPSHDRYRSRSRSTGHTRDRSRSRSIVEEYAHSKRRHSREQGSLHSTSRRKTDYDLDEERVRASRREHRHASIDMVDDDRREHSTRYHNRETRDSDRSRDRDVDRDLHREKKREEASRNKEVDWVRRREKERERSREKYRRDVEKDRSREREEDRDRRREKERDRSWETVFERDRRREKERDRSRDRTRGGERDRDWESERDYRNREKDNIKERDRRDDRYRHKDKDAVNGKDKHLRHDDGNDSGDRYRKHSRHEENEYRAKRKRNSDHPVKVYNSMGSTIEEDERKLKSGEVEQDDLDEDTLQLPEQEEEDLNRIKEESRRRREAIMAKYKKQNLQVEQTVGNEGKDKGADIPTDISEAIDGKNDDVDDAEAAEPSFAVGKSPENVKVEKISGAGGLGEGTPKSERSAEKFCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKPGNGEPEEVAIKIIRNNDTMYKAGMDELVVLKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRMILNIKPKDIGTIIAGSPGEDPKMLSNFKDLLDKVFILDPDKRLTVSQALNHPFITGK. 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08219 1031 FunFam Serine/threonine-protein kinase PRP4 homolog 773 1029 - -
Seca7g08219 1031 MobiDBLite consensus disorder prediction 1 570 - -
Seca7g08219 1031 SMART serkin_6 713 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08219 1031 MobiDBLite consensus disorder prediction 529 544 - -
Seca7g08219 1031 FunFam serine/threonine-protein kinase PRP4 homolog 684 772 - -
Seca7g08219 1031 MobiDBLite consensus disorder prediction 195 241 - -
Seca7g08219 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Seca7g08219 1031 Gene3D Phosphorylase Kinase; domain 1 684 772 - -
Seca7g08219 1031 Gene3D Transferase(Phosphotransferase) domain 1 773 1029 - -
Seca7g08219 1031 PANTHER DUAL SPECIFICITY PROTEIN KINASE 397 1029 - -
Seca7g08219 1031 CDD STKc_PRP4 712 1028 IPR044092 GO:0004674|GO:0006468|GO:0045292
Seca7g08219 1031 ProSiteProfiles Protein kinase domain profile. 713 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08219 1031 Coils Coil 531 551 - -
Seca7g08219 1031 MobiDBLite consensus disorder prediction 151 167 - -
Seca7g08219 1031 Pfam Protein kinase domain 715 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g08219 1031 MobiDBLite consensus disorder prediction 85 141 - -
Seca7g08219 1031 MobiDBLite consensus disorder prediction 249 520 - -
Seca7g08219 1031 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g08219 1031 SUPERFAMILY Protein kinase-like (PK-like) 700 1030 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08219 Seca-Chr7 186966189 186973427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08219 666 1030 MAP Kinase Gene Family AT2G18170 30.184 1.27e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Seca7g08219 Pkinase 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08219 K08827 - gmx:100776908 1485.7