Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08214 ATGAAGGTTTTCGTGAAGACTCTGAAAGGCACTCACTTCGAAATCGAAGTGAAGCCCCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTCATTCATCAAGGAAAAGTTCTTAAGGATGGTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTTTCAAAGAGTAAGAATACATCTGGTGAAGGCTCTACTACTTCAACTGCACCTTCAGCAAAGGCCCCACAGACAAGTGCAGCTCCTACTTCAACCCCCCCTGTGTCAGTACCACCTCAAGCTCCTGTTGCAACCGGGGCACCGACTGCACCTGCACCTGCACCTGCACCTGCGCCAGCTCCTATATCTTCAGACACTACTACGCCAGGTTCTGATGTCTATGGGCAGGCAGCATCCAATCTGGTTGCTGGTAGCAACTTGGAGGAAACAGTTCAGCAAATTCTTGATATGGGTGGAGACAGCTGGGATAGGGAAACTGTTGTCCGTGCTCTTCGAGCTGCCTATAATAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCTCCTGTGGCCCAAGTTCCTGCAAGTGCACAACCTGTAAATCCTCCAGCTGCAGCTCCACAAGCAACACAAGCTGCTTCTGTTACCTCAAGTGGACCTAATGCTAATCCTTTAGACCTGTTTCCCCAGGGCCTTCCCAATGTTGGTTCTGGGGCTGCTGGTGCCGGCTCTCTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGTAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCACCAAGCTGACTTCCTTCGCCTCATAAATGAACCTGTGGAAGGTGGTGAAGGGAACTTATTTGGGCACCTGGCTGCTACCACGCCACAGGCAATAACTATCACCCCTGAGGAGCGCCAAGCAATTGAACGTGTAAGTTTGACCTCTTGCCTATAA 1083 0.4774 MKVFVKTLKGTHFEIEVKPQDTVSEVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKNTSGEGSTTSTAPSAKAPQTSAAPTSTPPVSVPPQAPVATGAPTAPAPAPAPAPAPISSDTTTPGSDVYGQAASNLVAGSNLEETVQQILDMGGDSWDRETVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPASAQPVNPPAAAPQATQAASVTSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGHLAATTPQAITITPEERQAIERVSLTSCL. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08214 360 SUPERFAMILY XPC-binding domain 263 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Seca7g08214 360 Gene3D - 153 203 - -
Seca7g08214 360 Gene3D - 1 80 - -
Seca7g08214 360 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 158 201 IPR015940 -
Seca7g08214 360 PRINTS DNA repair protein Rad23 signature 292 314 IPR004806 GO:0006289
Seca7g08214 360 PRINTS DNA repair protein Rad23 signature 341 357 IPR004806 GO:0006289
Seca7g08214 360 Gene3D - 257 322 IPR036353 GO:0003684|GO:0006289|GO:0043161
Seca7g08214 360 SUPERFAMILY UBA-like 157 208 IPR009060 GO:0005515
Seca7g08214 360 Pfam UBA/TS-N domain 160 198 IPR015940 -
Seca7g08214 360 SMART CBM 264 307 IPR006636 -
Seca7g08214 360 MobiDBLite consensus disorder prediction 224 243 - -
Seca7g08214 360 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Seca7g08214 360 CDD Ubl_Rad23 1 74 - -
Seca7g08214 360 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 354 - -
Seca7g08214 360 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Seca7g08214 360 FunFam UV excision repair protein RAD23 1 80 - -
Seca7g08214 360 Pfam XPC-binding domain 266 321 IPR015360 GO:0003684|GO:0006289|GO:0043161
Seca7g08214 360 FunFam UV excision repair protein RAD23 B 257 322 - -
Seca7g08214 360 NCBIfam UV excision repair protein Rad23 1 354 IPR004806 GO:0006289
Seca7g08214 360 MobiDBLite consensus disorder prediction 78 104 - -
Seca7g08214 360 CDD UBA1_Rad23_plant 154 203 - -
Seca7g08214 360 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Seca7g08214 360 SMART ubq_7 1 75 IPR000626 GO:0005515
Seca7g08214 360 MobiDBLite consensus disorder prediction 105 135 - -
Seca7g08214 360 FunFam UV excision repair protein RAD23 homolog 153 203 - -
Seca7g08214 360 MobiDBLite consensus disorder prediction 78 148 - -
Seca7g08214 360 SMART uba_6 160 200 IPR015940 -
Seca7g08214 360 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08214 Seca-Chr7 186914159 186918742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08214 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 1.10e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08214 K10839 - gmx:100814162 472.241