Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g08206 ATGTCCCAGTGTCGGAAACAACCAGCAAATAGAATGAAGCCAAGGTCTCAGTCCTTGCAAGAGTCTAGGATGACAAAAAAACTGAGGATAATTTATGACGATCCTGATGCCACCGATTCATCATCCGATGACGAGCCAGAGATGATGGTGGAACCAAGAAAAGTGAAAAGAACTATCCATGAGATCTCACTTCCATTGGTTTCATCCATCTCTCCCTCTCCCTCTCCCGAAACTAGCTCTTGTGGAGAGAACAAGAACAACAATGCGATGATGAAGACAAGTCCTGAAGGTGAACCTCAAAACAAGAAGAGGGCTTCAACCCAAACCCCATCAACTGGAAGGCAATCTTGTGTCAAATACAGAGGTGTTAGACAGAGGAAGTGGGGAAAATGGGCTGCTGAGATTCGTGACCCGTTCAAGTGTTCCCGTGTCTGGTTAGGCACTTTCAACACTGCTGAAGAGGCTTCTCAAGTTTATGAGACCAAAAGACTCGAATTTGAAGCGATGAAGGCTCAAGCATGCAACAATGGTTCTTCATCTGCACCTTTGCCACCAGTTTCTGATAATACTGACAAGAGTAACCTGTGCAACTCTTCTGCTGCAGTGTCTGTATCAGAAAAATTTTCTACTACTTCGGAGGACACAGAGAGCTTGTTCTCACACACATCACCATCCTCCGTGCTTGAGCTGGATACTGTGGCTTCCAATTCGACTGAGAAGCTTGACATTTCAAGCAACAAAGTTGTTGAGACTAATGATTTGGTGGCCAAAGAAGCTGCTGAGGCAAATGATTTGGTGGCTGAACTAGCTGGGCTAGAGATACCTGATTTGAGTCTGTTGAACATGCCTCCACCACCTGCTGTTCTTGCTCCATCTGGCTGTGAGACTAATCTTACATTTGATTTTGATTGGTTATCTTTTGATGATTATGAGCAGGGTTTTGAGGACCTTGGTGGCCTGGAGGATATCCATATTTGTGGATTTGAAGACAATGAGCATAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGCGCAGATGAGATTGCTGGTTGGACTGAGGAACCCCTCAATATACCTTGTGCCTAA 1089 0.4481 MSQCRKQPANRMKPRSQSLQESRMTKKLRIIYDDPDATDSSSDDEPEMMVEPRKVKRTIHEISLPLVSSISPSPSPETSSCGENKNNNAMMKTSPEGEPQNKKRASTQTPSTGRQSCVKYRGVRQRKWGKWAAEIRDPFKCSRVWLGTFNTAEEASQVYETKRLEFEAMKAQACNNGSSSAPLPPVSDNTDKSNLCNSSAAVSVSEKFSTTSEDTESLFSHTSPSSVLELDTVASNSTEKLDISSNKVVETNDLVAKEAAEANDLVAELAGLEIPDLSLLNMPPPPAVLAPSGCETNLTFDFDWLSFDDYEQGFEDLGGLEDIHICGFEDNEHSELPDFDFGDFGADEIAGWTEEPLNIPCA. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g08206 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 247 - -
Seca7g08206 362 MobiDBLite consensus disorder prediction 1 116 - -
Seca7g08206 362 Gene3D AP2/ERF domain 118 176 IPR036955 GO:0003700|GO:0006355
Seca7g08206 362 Pfam AP2 domain 119 167 IPR001471 GO:0003700|GO:0006355
Seca7g08206 362 SUPERFAMILY DNA-binding domain 119 166 IPR016177 GO:0003677
Seca7g08206 362 SMART rav1_2 119 173 IPR001471 GO:0003700|GO:0006355
Seca7g08206 362 MobiDBLite consensus disorder prediction 46 60 - -
Seca7g08206 362 MobiDBLite consensus disorder prediction 1 19 - -
Seca7g08206 362 MobiDBLite consensus disorder prediction 64 116 - -
Seca7g08206 362 CDD AP2 119 159 IPR001471 GO:0003700|GO:0006355
Seca7g08206 362 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Seca7g08206 362 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Seca7g08206 362 MobiDBLite consensus disorder prediction 20 36 - -
Seca7g08206 362 ProSiteProfiles AP2/ERF domain profile. 119 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g08206 Seca-Chr7 186756118 186757628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g08206 20 361 AP2-EREBP Transcription Factor Family AT1G68550 36.000 3.11e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g08206 AP2 1.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g08206 - - gmx:100306276 419.468